View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1422_high_41 (Length: 248)

Name: NF1422_high_41
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1422_high_41
NF1422_high_41
[»] chr7 (14 HSPs)
chr7 (1-184)||(10599716-10599899)
chr7 (1-184)||(14568356-14568539)
chr7 (7-153)||(41508105-41508251)
chr7 (98-184)||(10409789-10409877)
chr7 (2-77)||(42935454-42935529)
chr7 (2-148)||(14650104-14650247)
chr7 (51-153)||(14658771-14658873)
chr7 (65-148)||(13777702-13777786)
chr7 (3-75)||(17757486-17757558)
chr7 (2-153)||(20949073-20949223)
chr7 (7-136)||(46341502-46341631)
chr7 (3-90)||(37048576-37048663)
chr7 (108-186)||(42935834-42935913)
chr7 (101-153)||(45072515-45072567)
[»] chr1 (15 HSPs)
chr1 (1-153)||(17971359-17971511)
chr1 (1-184)||(32715692-32715874)
chr1 (1-184)||(27442338-27442520)
chr1 (7-182)||(28723932-28724106)
chr1 (10-153)||(13603078-13603224)
chr1 (1-153)||(3574725-3574879)
chr1 (1-144)||(36437205-36437348)
chr1 (108-184)||(45691567-45691643)
chr1 (6-144)||(39150187-39150324)
chr1 (68-153)||(42454869-42454954)
chr1 (1-153)||(9851810-9851961)
chr1 (2-184)||(28165091-28165273)
chr1 (3-153)||(31181048-31181199)
chr1 (1-144)||(42745543-42745685)
chr1 (1-85)||(17988348-17988432)
[»] chr2 (23 HSPs)
chr2 (1-184)||(14200333-14200515)
chr2 (2-184)||(7011095-7011274)
chr2 (7-184)||(32872346-32872523)
chr2 (7-153)||(31404951-31405096)
chr2 (4-153)||(38214115-38214264)
chr2 (4-153)||(39063591-39063740)
chr2 (1-153)||(40442717-40442869)
chr2 (4-153)||(40503877-40504026)
chr2 (68-153)||(44173636-44173721)
chr2 (1-153)||(38496472-38496624)
chr2 (13-183)||(2287486-2287654)
chr2 (6-153)||(3268802-3268949)
chr2 (6-153)||(3269361-3269508)
chr2 (6-153)||(3269920-3270067)
chr2 (13-96)||(34262721-34262803)
chr2 (101-184)||(34309311-34309394)
chr2 (13-183)||(2315509-2315677)
chr2 (3-153)||(4015785-4015934)
chr2 (3-137)||(16781263-16781396)
chr2 (63-184)||(45723883-45724004)
chr2 (80-153)||(21794914-21794988)
chr2 (8-153)||(40664240-40664386)
chr2 (2-93)||(3711895-3711985)
[»] chr4 (12 HSPs)
chr4 (3-184)||(25376810-25376991)
chr4 (2-144)||(18838752-18838893)
chr4 (1-96)||(54863923-54864018)
chr4 (3-101)||(21128097-21128195)
chr4 (52-184)||(25382400-25382531)
chr4 (51-153)||(31707349-31707448)
chr4 (1-144)||(16572251-16572391)
chr4 (1-90)||(33721675-33721764)
chr4 (1-133)||(34319551-34319682)
chr4 (82-152)||(42312399-42312469)
chr4 (3-77)||(47231644-47231718)
chr4 (1-90)||(44884411-44884501)
[»] chr8 (14 HSPs)
chr8 (3-184)||(38209485-38209666)
chr8 (7-184)||(36408151-36408327)
chr8 (1-144)||(36054815-36054958)
chr8 (55-184)||(5923871-5924004)
chr8 (2-153)||(31658853-31659003)
chr8 (1-153)||(8251235-8251387)
chr8 (51-153)||(2152369-2152472)
chr8 (1-153)||(2207771-2207921)
chr8 (1-153)||(16890265-16890420)
chr8 (1-153)||(1445352-1445504)
chr8 (80-153)||(30653628-30653701)
chr8 (54-90)||(4641095-4641131)
chr8 (4-49)||(21504882-21504927)
chr8 (1-90)||(30112485-30112574)
[»] chr3 (22 HSPs)
chr3 (11-184)||(30041272-30041444)
chr3 (55-183)||(35104722-35104850)
chr3 (7-90)||(49983561-49983644)
chr3 (63-153)||(43105144-43105234)
chr3 (7-153)||(41559992-41560132)
chr3 (3-144)||(22923629-22923773)
chr3 (1-153)||(40344929-40345079)
chr3 (1-153)||(45261363-45261512)
chr3 (80-184)||(49983786-49983892)
chr3 (35-166)||(30577821-30577952)
chr3 (3-73)||(43105935-43106004)
chr3 (1-166)||(24650122-24650285)
chr3 (3-105)||(32211834-32211936)
chr3 (1-153)||(17003574-17003725)
chr3 (4-117)||(25295085-25295198)
chr3 (2-132)||(38854614-38854744)
chr3 (1-153)||(8825356-8825506)
chr3 (28-137)||(49787770-49787879)
chr3 (3-153)||(35455309-35455455)
chr3 (1-144)||(46918469-46918611)
chr3 (1-87)||(43320194-43320280)
chr3 (99-153)||(42279233-42279287)
[»] chr6 (7 HSPs)
chr6 (13-184)||(9425503-9425675)
chr6 (10-153)||(6657887-6658029)
chr6 (1-184)||(19780230-19780413)
chr6 (1-153)||(180339-180491)
chr6 (40-153)||(34837147-34837260)
chr6 (3-90)||(1856752-1856839)
chr6 (98-153)||(12143716-12143771)
[»] scaffold0015 (1 HSPs)
scaffold0015 (3-181)||(38802-38979)
[»] scaffold0006 (1 HSPs)
scaffold0006 (10-153)||(131735-131881)
[»] scaffold1809 (1 HSPs)
scaffold1809 (1-144)||(503-646)
[»] scaffold0836 (1 HSPs)
scaffold0836 (1-144)||(3021-3164)
[»] scaffold0088 (1 HSPs)
scaffold0088 (2-153)||(51273-51424)
[»] chr5 (12 HSPs)
chr5 (57-153)||(11691056-11691152)
chr5 (1-144)||(27193010-27193153)
chr5 (2-148)||(17693562-17693705)
chr5 (5-108)||(3257251-3257354)
chr5 (1-47)||(1962962-1963008)
chr5 (7-137)||(6688792-6688924)
chr5 (4-144)||(3629215-3629355)
chr5 (3-154)||(17686233-17686384)
chr5 (41-144)||(2225619-2225722)
chr5 (22-117)||(11983614-11983709)
chr5 (6-153)||(18705003-18705150)
chr5 (68-144)||(14917792-14917865)
[»] scaffold0024 (1 HSPs)
scaffold0024 (2-151)||(154340-154489)


Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 10599899 - 10599716
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||    
T  10599899 cctatttataagaaaaagtcacaacttttgaggtacatttattgtttgaaaaacttttctaaccttcatttaatgtttatctttttaataatagtgtgta 10599800  T
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 184  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||| ||||||||||||    
T  10599799 tatttaatacttcacaaaattttatgagggtatatttgtaaaatcattcaaaacattgcaacaactaatcaatgtcttggtttt 10599716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 14568356 - 14568539
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    ||||| |||||||||||||  |||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| |||||| || | ||||| |||    
T  14568356 cctatatataagaaaaagtttcaacttttaagatatatttattgtttaaaagacttttctaaccctcatttaatgtttctcttttcaaaattagtgggta 14568455  T
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 184  Q
    |||| ||||||||| ||| || ||  | ||||||||| ||||||||||||||| ||| ||| |||| || ||||||||||||||    
T  14568456 tattgaatacttcaaaaatttataatacggtatatttgtaaaaacattcaaaatattacaataactaatgattgtcttggtttt 14568539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 153
Target Start/End: Original strand, 41508105 - 41508251
Alignment:
Q  7 tataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatattta 106  Q
    ||||||||||  |||||| ||||||| |  | |||||| || | |||||||| || |||| ||||||||||| ||||||||||| ||||| || ||||||    
T  41508105 tataagaaaatatcacaatttttaaggtgtagttattgcttaaaagacttttttaccccttatttaatgtttgtctttttaatattagtgggtgtattta 41508204  T
Q  107 atacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    || ||||||||  |||||||||||||||||| |||||||||||||||    
T  41508205 atgcttcacaattttttatgagggtatatttgtaaaaacattcaaaa 41508251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 184
Target Start/End: Original strand, 10409789 - 10409877
Alignment:
Q  98 gtatatttaatacttcacaaaattttatgagggtatatttataaaaacattc--aaaacattgcaacaacttatcattgtcttggtttt 184  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||  |||| |||||||||||| || ||||| ||||||||    
T  10409789 gtatatttaatacttcacaaatttttaagagggtatatttataaaaacattcaaaaaaaattgcaacaactaatgattgttttggtttt 10409877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 42935454 - 42935529
Alignment:
Q  2 ctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtt 77  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| | ||| ||||||||  |||||||||||||    
T  42935454 ctatttataagaaaaagtcacaacttttgagatacatttattgtttaaaagatttttctaattctcatttaatgtt 42935529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 148
Target Start/End: Complemental strand, 14650247 - 14650104
Alignment:
Q  2 ctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaac-cctcatttaatgtttatctttttaataatagtgtgta 100  Q
    ||||||||||||||| ||||||| |||||||||  ||||||||  | | |||||||| | |  ||||||| |||||||||| |||||||| |||||  ||    
T  14650247 ctatttataagaaaatgtcacaatttttaagatgtatttattgcataaaagactttttttagtcctcattcaatgtttatcattttaatactagtggata 14650148  T
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaacatt 148  Q
    ||||    |||||| ||||||||| |||||||||||| ||||||||||    
T  14650147 tatt----acttcataaaattttacgagggtatatttgtaaaaacatt 14650104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 153
Target Start/End: Complemental strand, 14658873 - 14658771
Alignment:
Q  51 agacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattca 150  Q
    ||||||||  || |||| |||||||||||||||||||||| |||||   ||||||||||||||| |   |||||||||||||||||| |||||||||| |    
T  14658873 agactttttcaatcctcgtttaatgtttatctttttaatactagtggaaatatttaatacttcatatgtttttatgagggtatatttgtaaaaacattta 14658774  T
Q  151 aaa 153  Q
    |||    
T  14658773 aaa 14658771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 13777702 - 13777786
Alignment:
Q  65 ctcatttaatgtttatctttttaa-taatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacatt 148  Q
    |||||||||| ||| ||||||||| || ||||  ||||||||||||||||||||| ||||||||  |||||||||||||||||||    
T  13777702 ctcatttaatatttgtctttttaagtattagtaagtatatttaatacttcacaaatttttatgaacgtatatttataaaaacatt 13777786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 17757558 - 17757486
Alignment:
Q  3 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatg 75  Q
    |||||||||||||||| ||||||||||||| ||||||||||| || | |||| ||| ||||||| ||||||||    
T  17757558 tatttataagaaaaagacacaacttttaaggtacatttattgcttaaaagacatttttaaccctaatttaatg 17757486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 20949073 - 20949223
Alignment:
Q  2 ctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtat 101  Q
    ||||||||||||||| |||| |||||||||| |  | |||||| || |  || |||| || |||| ||||||||| | |||||| |||| |||| ||| |    
T  20949073 ctatttataagaaaatgtcataacttttaaggtgtagttattgcttaaatgatttttttatccct-atttaatgtctctcttttgaatattagtatgtgt 20949171  T
Q  102 atttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    |||||||  |||||||  |||||||||||||||||| |||||| ||| ||||    
T  20949172 atttaatgtttcacaattttttatgagggtatatttgtaaaaatatttaaaa 20949223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 46341502 - 46341631
Alignment:
Q  7 tataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatattta 106  Q
    ||||||||||  |||||||||||||| |  | |||||| || | |||||| |||| | || ||||| ||||| | ||||| ||||||||| || ||||||    
T  46341502 tataagaaaatatcacaacttttaaggtgtagttattgcttaaaagacttctctaccacttatttattgtttttgtttttgataatagtgggtgtattta 46341601  T
Q  107 atacttcacaaaattttatgagggtatatt 136  Q
    || ||||||||  ||||| |||||||||||    
T  46341602 atgcttcacaactttttacgagggtatatt 46341631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 37048576 - 37048663
Alignment:
Q  3 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaata 90  Q
    ||||||||||||||  |||||||||||||  |  | | ||||||| | ||||||||||| || | |||||||||||||||||||||||    
T  37048576 tatttataagaaaatatcacaacttttaaagtgtagtgattgtttaaaagacttttctaccctttatttaatgtttatctttttaata 37048663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 42935834 - 42935913
Alignment:
Q  108 tacttcacaaaattttatgagggtatatttataaaaacat-tcaaaacattgcaacaacttatcattgtcttggtttttg 186  Q
    ||||||||||  ||||| |||||||||||| |||||||||   |||| |||||||||||| || ||||||||| ||||||    
T  42935834 tacttcacaagtttttaagagggtatatttgtaaaaacatgaaaaaaaattgcaacaactaatgattgtcttgatttttg 42935913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 45072567 - 45072515
Alignment:
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    |||||||| |||||||   ||||||||| ||||||||||||||| ||||||||    
T  45072567 tatttaatgcttcacagttttttatgagagtatatttataaaaatattcaaaa 45072515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 17971511 - 17971359
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    |||||||||||||||||||||||||||||||| || ||||||||||| | |||||||||||||||||||||||||||  |||||| |||| |||||||||    
T  17971511 cctatttataagaaaaagtcacaacttttaaggtatatttattgtttaaaagacttttctaaccctcatttaatgttggtcttttcaatattagtgtgta 17971412  T
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    |||||||||||||||||| ||||| |||||||||||| |||||||||||||||    
T  17971411 tatttaatacttcacaaatttttaagagggtatatttgtaaaaacattcaaaa 17971359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 32715692 - 32715874
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    |||||||||||||||||||||||| ||||||| | |||||||||||| | || |||||||| ||||||||||||||| ||||||| |||| ||||| |||    
T  32715692 cctatttataagaaaaagtcacaaattttaaggt-catttattgtttaaaagtcttttctagccctcatttaatgttgatcttttcaatattagtgggta 32715790  T
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 184  Q
    |||||||||||||||||| |||||||||| ||||||| ||||||||||||||| ||| |||||||| || ||||||||||||||    
T  32715791 tatttaatacttcacaaatttttatgaggatatatttgtaaaaacattcaaaaaattacaacaactaatgattgtcttggtttt 32715874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 27442520 - 27442338
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    ||||||||||||||||| |||||||||||||  || ||||| ||||| | |||||||||||||||||||||||||||  |||||  |||| || || |||    
T  27442520 cctatttataagaaaaaatcacaacttttaaagtatatttagtgtttaaaagacttttctaaccctcatttaatgttggtctttc-aatattaatgggta 27442422  T
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 184  Q
    |||||||||||||||||| |||||||||| ||||||| ||||||||||||||| |||||||||||| || ||||||||||||||    
T  27442421 tatttaatacttcacaaatttttatgaggatatatttgtaaaaacattcaaaaaattgcaacaactaatgattgtcttggtttt 27442338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 182
Target Start/End: Complemental strand, 28724106 - 28723932
Alignment:
Q  7 tataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatattta 106  Q
    |||||||||||||||||||||| | | | |||||||| ||| | |||||||||||||||||| ||||||||||||||||||||| |||||  ||||||||    
T  28724106 tataagaaaaagtcacaactttaatg-tgcatttattatttaaaagacttttctaaccctcaattaatgtttatctttttaatattagtggttatattta 28724008  T
Q  107 atacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtt 182  Q
    |||||||||||| |||||||||||||||| | ||||| ||||||||| ||| ||||  || || ||||||||||||    
T  28724007 atacttcacaaatttttatgagggtatatctgtaaaagcattcaaaaaattacaaccgctaatgattgtcttggtt 28723932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 153
Target Start/End: Original strand, 13603078 - 13603224
Alignment:
Q  10 aagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaat- 108  Q
    ||||||||||||||||||| ||| | |||||||||||  | |||||||||||||| ||| | || |||| ||||||||||| |||||  ||||||||||     
T  13603078 aagaaaaagtcacaacttt-aaggtgcatttattgttcaaaagacttttctaaccttcaataaaagtttgtctttttaatattagtggttatatttaata 13603176  T
Q  109 --acttcacaaaattttatgagggtatatttat-aaaaacattcaaaa 153  Q
      |||||||||| |||||||||||||||||| | ||||||||||||||    
T  13603177 atacttcacaaatttttatgagggtatatttgtaaaaaacattcaaaa 13603224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 3574725 - 3574879
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    |||||||||||||||| |||||||||||| | ||  | ||||||||| | | | || |||| ||||||||||||||||||| |||||||| || | || |    
T  3574725 cctatttataagaaaatgtcacaacttttcaaatgtagttattgtttaaaaaatttgtctacccctcatttaatgtttatcattttaatattaatttgaa 3574824  T
Q  101 t--atttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    |  |||||||| |||||||  |||||| || ||||||||||||||||||||||||    
T  3574825 tgtatttaatatttcacaattttttataagagtatatttataaaaacattcaaaa 3574879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 36437348 - 36437205
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtg-t 99  Q
    |||||||||||||||| |||||||||||||||  | | |||||| || | |||||||| || |||||||||||||| | ||||||||||| ||||| | |    
T  36437348 cctatttataagaaaatgtcacaacttttaag-gatagttattgcttaaaagacttttttatccctcatttaatgtctgtctttttaatattagtgggat 36437250  T
Q  100 atatttaatacttcacaaaattttatgagggtatatttataaaaa 144  Q
     ||||||||  ||||||| ||| ||| ||||||||||| ||||||    
T  36437249 gtatttaatgtttcacaacattctataagggtatatttgtaaaaa 36437205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 45691643 - 45691567
Alignment:
Q  108 tacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 184  Q
    ||||||||||| |||||||||||||||||| |||||| |||||||| ||| |||||||| || ||||||||||||||    
T  45691643 tacttcacaaatttttatgagggtatatttgtaaaaatattcaaaaaattacaacaactaataattgtcttggtttt 45691567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 39150324 - 39150187
Alignment:
Q  6 ttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatattt 105  Q
    |||||||||||  |||| ||||||||| |  | |||||| || | ||||||||||| |||| ||||||||||| | ||||||||| || || || |||||    
T  39150324 ttataagaaaatatcactacttttaaggtgtagttattgcttaaaagacttttctaccccttatttaatgtttttgtttttaatattaatgagtgtattt 39150225  T
Q  106 aatacttcacaaaattttatgagggtatatttataaaaa 144  Q
    ||| |||||| || |||||||||||||||||| ||||||    
T  39150224 aatgcttcac-aacttttatgagggtatatttgtaaaaa 39150187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 153
Target Start/End: Complemental strand, 42454954 - 42454869
Alignment:
Q  68 atttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    |||||| |||| ||||||||||| ||||| || |||||||| ||||| ||  ||||||||||||||||||||||||| ||||||||    
T  42454954 atttaacgtttgtctttttaatattagtgagtgtatttaatgcttcataattttttatgagggtatatttataaaaatattcaaaa 42454869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 9851961 - 9851810
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    |||||||||||||||| ||||||||||||||  |  | |||||| || |  ||| ||| || |||| ||||||||||| |||||| |||| ||||| |||    
T  9851961 cctatttataagaaaatgtcacaacttttaaagtgtagttattgcttaaatgacctttttatccct-atttaatgtttctcttttaaatattagtgggta 9851863  T
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    ||||||||  ||||||  ||||||| | ||||||||| |||||| ||||||||    
T  9851862 tatttaatgtttcacagtattttataaaggtatatttgtaaaaatattcaaaa 9851810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 184
Target Start/End: Complemental strand, 28165273 - 28165091
Alignment:
Q  2 ctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtat 101  Q
    |||||||||| |||| ||||||||||| ||| || | |||||| || | ||| |||| || |||||||| | | ||||||||||||||| | ||   | |    
T  28165273 ctatttataataaaatgtcacaactttaaaggtatagttattgcttaaaagatttttttacccctcattaagtctttatctttttaatattggtagatgt 28165174  T
Q  102 atttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 184  Q
    |||||||  |||||||  |||||| ||||||||||| |||||| |||||||| ||| ||| || | || ||||| ||||||||    
T  28165173 atttaatgtttcacaattttttataagggtatatttgtaaaaatattcaaaaaattacaataattgatgattgtattggtttt 28165091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 153
Target Start/End: Complemental strand, 31181199 - 31181048
Alignment:
Q  3 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatg-tttatctttttaataatagtgtgtat 101  Q
    |||||||||||||| ||||||||||||||  || | ||||||||| | |||||||| ||  | |||||||||| ||| | ||||||||| ||| | || |    
T  31181199 tatttataagaaaatgtcacaacttttaacttatagttattgtttaaaagacttttttacacttcatttaatgttttttttttttaatattagcgagtgt 31181100  T
Q  102 atttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    |||||||  |||||||  || ||| |||||||| || |||||| ||||||||    
T  31181099 atttaatgtttcacaattttctataagggtatacttgtaaaaatattcaaaa 31181048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 42745543 - 42745685
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    |||||||||||||||| ||||||| |||| |  || | ||||||||| | | |||||| || ||||||||||| | ||  |||||||||| |||||  |     
T  42745543 cctatttataagaaaatgtcacaatttttgaagtataattattgtttaaaatactttt-tatccctcatttaaggattgcctttttaatattagtggatg 42745641  T
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaa 144  Q
    ||||||||  ||||||| ||| ||| ||||||||||| ||||||    
T  42745642 tatttaatgtttcacaacattctataagggtatatttgtaaaaa 42745685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 17988432 - 17988348
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttt 85  Q
    |||| ||||||||||| ||||||||||||||| |  | ||||||||| | |||||||| || |||| |||||||| || ||||||    
T  17988432 cctacttataagaaaatgtcacaacttttaaggtgtagttattgtttaaaagacttttttaccccttatttaatgcttctctttt 17988348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 14200515 - 14200333
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||| | |||||||| |||||||||||||||||| ||||||| |||| ||||| |||    
T  14200515 cctatttataagaaaa-gtcacaacttttaagatacatttattatttaaaagacttttttaaccctcatttaatgttgatcttttcaatattagtgagta 14200417  T
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 184  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||   | |||| || ||||||||||||||    
T  14200416 tatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattaggataactaatgattgtcttggtttt 14200333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 184
Target Start/End: Original strand, 7011095 - 7011274
Alignment:
Q  2 ctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtat 101  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||    |||||||| |||| ||||| ||||    
T  7011095 ctatttataagaaaaagtcacaatttttaagatacatttattgtttaaaagacttttctaaccctcatttaa----tatcttttcaatattagtgggtat 7011190  T
Q  102 atttaatacttcacaaaattttatgagggtatatttataaaaacattc-aaaacattgcaacaacttatcattgtcttggtttt 184  Q
    ||||||||||||||||| ||||||||| |||||||| ||||||||||| |||| ||||||||||||  | ||||||||| ||||    
T  7011191 atttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaaattgcaacaactactgattgtcttgatttt 7011274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 7 - 184
Target Start/End: Original strand, 32872346 - 32872523
Alignment:
Q  7 tataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatattta 106  Q
    |||||||||||||    ||||||||| |||||||||||||| | ||||||||| |||||| ||||||||||| || |||||||| ||||| |||||||||    
T  32872346 tataagaaaaagttgtgacttttaagttacatttattgtttaaaagacttttccaaccctaatttaatgtttgtccttttaatattagtgggtatattta 32872445  T
Q  107 atacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 184  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||| ||| |||| ||| || ||||||||||||||    
T  32872446 atacttcacaattttttatgagggtatatttgtaaaaacattcaaaaaattacaaccactaatgattgtcttggtttt 32872523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 153
Target Start/End: Original strand, 31404951 - 31405096
Alignment:
Q  7 tataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatattta 106  Q
    ||||||||||||||| |  ||||||| |||||||||| ||| | |||||||||||||||||||||||| ||| ||||||||||| |||||  ||||||||    
T  31404951 tataagaaaaagtcatat-ttttaaggtacatttattttttaaaagacttttctaaccctcatttaatatttgtctttttaatattagtgcatatattta 31405049  T
Q  107 atacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    |||||||| ||| || ||||||| ||||||| |||||| ||||||||    
T  31405050 atacttcataaatttctatgaggatatatttgtaaaaatattcaaaa 31405096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 38214115 - 38214264
Alignment:
Q  4 atttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatat 103  Q
    |||||||||||||| |||||||||||||| |  ||||||||||| | |||||||| || ||||||||||||  || ||||||||||| |||| ||| |||    
T  38214115 atttataagaaaaattcacaacttttaaggtgtatttattgtttaaaagacttttatatccctcatttaatacttctctttttaatattagtatgtgtat 38214214  T
Q  104 ttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    |||||  |||||||  |||||||||| ||||||| |||||| ||||||||    
T  38214215 ttaatgtttcacaattttttatgaggatatatttgtaaaaatattcaaaa 38214264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 39063740 - 39063591
Alignment:
Q  4 atttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatat 103  Q
    |||||||||||||| |||||||||||||| |  ||||||||||| | |||||||| ||   ||||||||||  || ||||||||||| |||||||| |||    
T  39063740 atttataagaaaaattcacaacttttaaggtgtatttattgtttaaaagacttttatattgctcatttaatacttctctttttaatattagtgtgtgtat 39063641  T
Q  104 ttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    |||||  |||||||  |||||||||| ||||||| |||||| ||||||||    
T  39063640 ttaatgtttcacaattttttatgaggttatatttgtaaaaatattcaaaa 39063591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 40442717 - 40442869
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    |||||||||||||||| ||||||||||||||| |  | ||||||||| | | |||||| || |||| ||||| ||||||||||||||||| ||||  ||     
T  40442717 cctatttataagaaaatgtcacaacttttaaggtgtaattattgtttaaaaaacttttataccccttatttattgtttatctttttaatattagtaggtg 40442816  T
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
     ||||||| ||||||||  |||||| ||||||||| |||||||| ||||||||    
T  40442817 catttaatgcttcacaactttttataagggtatatctataaaaatattcaaaa 40442869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 40503877 - 40504026
Alignment:
Q  4 atttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatat 103  Q
    ||||||||||||| ||||||||||||||| |  | ||||||||| | | |||||| || |||| ||||| ||||| ||||||||||| ||||  ||  ||    
T  40503877 atttataagaaaatgtcacaacttttaaggtgtaattattgtttaaaaaacttttataccccttatttattgtttgtctttttaatattagtaggtgcat 40503976  T
Q  104 ttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    ||||| ||||||||  |||||||||||||||| | |||||| ||||||||    
T  40503977 ttaatgcttcacaactttttatgagggtatatctgtaaaaatattcaaaa 40504026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 153
Target Start/End: Complemental strand, 44173721 - 44173636
Alignment:
Q  68 atttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    ||||||||||||||||||||||| |||||  |||| ||||||||| ||||||||||  |||||||||||| |||||||||| ||||    
T  44173721 atttaatgtttatctttttaatattagtgaatatagttaatactttacaaaattttccgagggtatatttctaaaaacatttaaaa 44173636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 38496472 - 38496624
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    |||||||||||||||| |||| || ||||||| || | ||||||||| | |||| |||||| |||| |||||| |||| | ||||||||| ||||  ||     
T  38496472 cctatttataagaaaatgtcagaatttttaaggtatagttattgtttaaaagacctttctaccccttatttaacgtttgtatttttaatattagtaggtg 38496571  T
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    ||||||||  ||| || | |||||| ||||||||||| |||||| ||||||||    
T  38496572 tatttaatgtttcgcacatttttatcagggtatatttgtaaaaatattcaaaa 38496624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 183
Target Start/End: Complemental strand, 2287654 - 2287486
Alignment:
Q  13 aaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatactt 112  Q
    ||||||||||||||||||| ||| |||||||  || | |||||||| ||||| || |||||| ||| | ||||||||| ||||  |||||||||||| ||    
T  2287654 aaaaagtcacaacttttaaaatatatttatttgttaaaagactttt-taaccttcgtttaatatttttttttttaatattagta-gtatatttaatattt 2287557  T
Q  113 cacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggttt 183  Q
     ||||| ||  ||||  ||||| ||||||||||||||||||  ||||||| | | || |||||||||||||    
T  2287556 tacaaatttcgatgaaagtataattataaaaacattcaaaatgttgcaactattaattattgtcttggttt 2287486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 153
Target Start/End: Original strand, 3268802 - 3268949
Alignment:
Q  6 ttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatattt 105  Q
    |||||||||||  |||||||||||||| |  | ||||||  | | ||||||||||| |||| ||||||||||| | ||||||||| || |  || |||||    
T  3268802 ttataagaaaatatcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgtttttgtttttaatattaataggtgtattt 3268901  T
Q  106 aatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    ||  ||||||||  |||||| ||||||||||| |||||| ||||||||    
T  3268902 aaggcttcacaactttttataagggtatatttgtaaaaatattcaaaa 3268949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 153
Target Start/End: Original strand, 3269361 - 3269508
Alignment:
Q  6 ttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatattt 105  Q
    |||||||||||  |||||||||||||| |  | ||||||  | | ||||||||||| |||| ||||||||||| | ||||||||| || |  || |||||    
T  3269361 ttataagaaaatatcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgtttttgtttttaatattaataggtgtattt 3269460  T
Q  106 aatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    ||  ||||||||  |||||| ||||||||||| |||||| ||||||||    
T  3269461 aaggcttcacaactttttataagggtatatttgtaaaaatattcaaaa 3269508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 153
Target Start/End: Original strand, 3269920 - 3270067
Alignment:
Q  6 ttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatattt 105  Q
    |||||||||||  |||||||||||||| |  | ||||||  | | ||||||||||| |||| ||||||||||| | ||||||||| || |  || |||||    
T  3269920 ttataagaaaatatcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgtttttgtttttaatattaataggtgtattt 3270019  T
Q  106 aatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    ||  ||||||||  |||||| ||||||||||| |||||| ||||||||    
T  3270020 aaggcttcacaactttttataagggtatatttgtaaaaatattcaaaa 3270067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 34262721 - 34262803
Alignment:
Q  13 aaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtg 96  Q
    ||||||| |||| ||||||| | |||||||||||| | |||||||||||||||||| ||||||||| ||||||||||| |||||    
T  34262721 aaaaagtaacaa-ttttaaggttcatttattgtttaaaagacttttctaaccctcaattaatgtttgtctttttaatattagtg 34262803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 184
Target Start/End: Original strand, 34309311 - 34309394
Alignment:
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 184  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||||||||| ||| |||  ||| || ||||||||| ||||    
T  34309311 tatttaatacttcacaaatttttatgagggtatatttgtaaaagcattcaaaaaattacaatcactaatgattgtcttgatttt 34309394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 183
Target Start/End: Complemental strand, 2315677 - 2315509
Alignment:
Q  13 aaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatactt 112  Q
    ||||||||||||||| ||| ||| |||||||  || | |||||||| ||||| || |||||| ||| ||||||||||| || |  |||||||||||| ||    
T  2315677 aaaaagtcacaacttataaaatatatttattagttaaaagactttt-taaccttcgtttaatatttctctttttaatattaata-gtatatttaatattt 2315580  T
Q  113 cacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggttt 183  Q
     ||||| ||  ||||  ||||| ||||||||||||||||||  ||||||| | | || |||||||||||||    
T  2315579 tacaaatttcgatgaaagtataattataaaaacattcaaaatgttgcaactattaattattgtcttggttt 2315509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 153
Target Start/End: Complemental strand, 4015934 - 4015785
Alignment:
Q  3 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtata 102  Q
    ||||||||||||||||||||||| | ||||||| | ||| ||||| | ||||||||||| |||| | ||||||||| ||||| ||||| ||||  ||  |    
T  4015934 tatttataagaaaaagtcacaac-tctaagatatagttaatgtttaaaagacttttctaccccttagttaatgtttgtctttgtaatattagtaggtgca 4015836  T
Q  103 tttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    ||||||  |||| ||  ||| | ||||||||||||||| ||  ||||||||    
T  4015835 tttaatgtttcataatttttaacgagggtatatttatataattattcaaaa 4015785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 16781263 - 16781396
Alignment:
Q  3 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtata 102  Q
    ||||||||||||||||||||||| |||||| || | ||| ||||| | |||||||||||  ||| | ||||||||| ||||| ||||| ||||  || ||    
T  16781263 tatttataagaaaaagtcacaac-tttaaggtataattaatgtttaaaagacttttctacgccttagttaatgtttgtctttgtaatattagtaggtgta 16781361  T
Q  103 tttaatacttcacaaaattttatgagggtatattt 137  Q
    ||||||  ||||| |  ||| ||||||||||||||    
T  16781362 tttaatgtttcaccatttttaatgagggtatattt 16781396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 184
Target Start/End: Complemental strand, 45724004 - 45723883
Alignment:
Q  63 ccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaac 162  Q
    |||||||||||| ||  |||||| |||| ||||  ||||||||||||||| | ||| |||||||| | ||||||| ||| ||||||||||| |||  | |    
T  45724004 ccctcatttaatattggtcttttcaatattagtaggtatatttaatactttataaatttttatgaagatatatttgtaacaacattcaaaaaattagagc 45723905  T
Q  163 aacttatcattgtcttggtttt 184  Q
    |||| || ||||| ||||||||    
T  45723904 aactaatgattgttttggtttt 45723883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 21794914 - 21794988
Alignment:
Q  80 tctttttaataatagtgtgtatatttaatacttcacaaaatttt-atgagggtatatttataaaaacattcaaaa 153  Q
    ||||||||||| |||||||| ||||||||  |||||||  |||| |||||||||||||| |||||| ||||||||    
T  21794914 tctttttaatattagtgtgtgtatttaatgtttcacaatttttttatgagggtatatttgtaaaaatattcaaaa 21794988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 40664240 - 40664386
Alignment:
Q  8 ataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatcttttt-aataatagtgtgtatattta 106  Q
    |||||||||  |||||||| ||||  |  ||||||| ||| | |||||||| || ||||||||||||| || ||||||| || | | |||||| ||||||    
T  40664240 ataagaaaatttcacaactcttaaagtgtatttattatttaaaagacttttatatccctcatttaatgcttctcttttttaacattggtgtgtgtattta 40664339  T
Q  107 atacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    ||  |||||||  ||||| |||||||||||| ||| || ||||||||    
T  40664340 atgtttcacaattttttacgagggtatatttgtaagaatattcaaaa 40664386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 3711985 - 3711895
Alignment:
Q  2 ctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataata 93  Q
    ||||||||||||||| |||||||||||||||  | | ||||||||| | |||||||| || | || ||||||||| ||||||| ||| ||||    
T  3711985 ctatttataagaaaatgtcacaacttttaag-gatagttattgtttaaaagacttttttatcgcttatttaatgtatatctttgtaaaaata 3711895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 3 - 184
Target Start/End: Complemental strand, 25376991 - 25376810
Alignment:
Q  3 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtata 102  Q
    |||||| ||||||||||||||  ||||||| || | ||||||||| | ||||||||||||||||||||||||||| ||||||| |||| | ||| |||||    
T  25376991 tatttacaagaaaaagtcacagattttaaggtataattattgtttaaaagacttttctaaccctcatttaatgttgatcttttcaatatttgtgagtata 25376892  T
Q  103 tttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 184  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||||||| ||| |||||||| || ||||||||||||||    
T  25376891 tttaatacttcacaaatttttaagagggtatatttgtaaaaacattcaaaaaattacaacaactaatgattgtcttggtttt 25376810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 2 - 144
Target Start/End: Original strand, 18838752 - 18838893
Alignment:
Q  2 ctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtat 101  Q
    |||||||| |||||| |||| |||||||||| || | ||||||||| | ||||||||||| ||||||||||||| |||||||||||||| ||||| || |    
T  18838752 ctatttatgagaaaatgtcataacttttaaggtataattattgtttaaaagacttttcta-ccctcatttaatgattatctttttaatattagtgggtgt 18838850  T
Q  102 atttaatacttcacaaaattttatgagggtatatttataaaaa 144  Q
    |||||||  |||||||  |||||||||||||||||| ||||||    
T  18838851 atttaatgtttcacaattttttatgagggtatatttgtaaaaa 18838893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 54863923 - 54864018
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtg 96  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| | || |||||||||| ||||||||||||| ||||||| |||| |||||    
T  54863923 cctatttataagaaaaagtcacaacttttaaggtacatttattgtttaaaaggcttttctaactctcatttaatgttgatcttttcaatattagtg 54864018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 21128097 - 21128195
Alignment:
Q  3 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtat 101  Q
    |||||||||||||| |||| |||||||||  || ||||||| ||| | ||||||||| ||||||||||| |||||||||||||| ||| ||||| ||||    
T  21128097 tatttataagaaaatgtcataacttttaatgtatatttattttttaaaagacttttccaaccctcattttatgtttatcttttttatattagtgagtat 21128195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 184
Target Start/End: Original strand, 25382400 - 25382531
Alignment:
Q  52 gacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaa 151  Q
    ||||||| || |||| ||||||||||  |||||||| || ||||| |||| |||||||||||||||| ||| || ||||||||||| | |||||||||||    
T  25382400 gacttttgtagcccttatttaatgttagtctttttagtattagtgagtatttttaatacttcacaaattttcataagggtatatttgt-aaaacattcaa 25382498  T
Q  152 aacattgcaacaacttatcattgtcttggtttt 184  Q
    || ||||| | || | || ||||||||| ||||    
T  25382499 aaaattgccataattaattattgtcttgatttt 25382531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 153
Target Start/End: Complemental strand, 31707448 - 31707349
Alignment:
Q  51 agacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattca 150  Q
    ||||||||||| |||| ||||||||||| ||||||||||| ||||| || |||   || ||||| ||| |||||||||||||||||| |||||| |||||    
T  31707448 agacttttctaccccttatttaatgtttgtctttttaatattagtgggtgtat---atgcttcataaatttttatgagggtatatttgtaaaaatattca 31707352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 16572251 - 16572391
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    |||||||||||||||| ||||||||||||||| |  | |||||| || ||||| |||| || |||||||||||||  | | ||||||||| ||||   |     
T  16572251 cctatttataagaaaatgtcacaacttttaaggtgtagttattgcttaacagaattttttatccctcatttaatgactgtatttttaatattagt---tg 16572347  T
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaa 144  Q
    ||||||||| ||||||| ||| ||| | ||||||||| ||||||    
T  16572348 tatttaatatttcacaatattctataatggtatatttttaaaaa 16572391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 33721764 - 33721675
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaata 90  Q
    |||||||||||||||| ||||||| ||||||  |  | ||||||||| | ||||||||||| | ||| ||||||||||||| ||||||||    
T  33721764 cctatttataagaaaatgtcacaatttttaatgtgtagttattgtttaaaagacttttctacctctcgtttaatgtttatccttttaata 33721675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 34319551 - 34319682
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    |||||||||||||||| ||||||| ||||||  | |  ||||||||| | |  ||||||| ||||| ||||||||||| ||||||||||| |  ||  ||    
T  34319551 cctatttataagaaaatgtcacaatttttaaagtgcggttattgtttaaaaagcttttct-acccttatttaatgtttttctttttaatatttatggata 34319649  T
Q  101 tatttaatacttcacaaaattttatgagggtat 133  Q
    ||||||||  || ||||  ||||||||||||||    
T  34319650 tatttaatgttttacaattttttatgagggtat 34319682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 42312469 - 42312399
Alignment:
Q  82 tttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaa 152  Q
    ||||||||| ||| |  ||||||| || ||||||||  |||||||||||||||||| |||||| |||||||    
T  42312469 tttttaatattagaggatatattttatgcttcacaattttttatgagggtatatttgtaaaaatattcaaa 42312399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 47231718 - 47231644
Alignment:
Q  3 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtt 77  Q
    |||||||||||||| ||||  |||||||||||| ||||||||||| | ||| |||| || | || ||||||||||    
T  47231718 tatttataagaaaatgtcaatacttttaagatatatttattgtttaaaagatttttttacctcttatttaatgtt 47231644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 44884501 - 44884411
Alignment:
Q  1 cctatttataagaaaaagtcacaactttt--aagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaata 90  Q
    ||||| |||||||||| ||||||||||||  ||| |  | ||||||||| | |||||||| || ||||||||||||||||  ||||||||||    
T  44884501 cctatatataagaaaatgtcacaacttttttaaggtgtagttattgtttaaaagactttt-tatccctcatttaatgtttgcctttttaata 44884411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 184
Target Start/End: Complemental strand, 38209666 - 38209485
Alignment:
Q  3 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtata 102  Q
    |||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||||||||||||||||||||  |||||| |||| ||||| |||||    
T  38209666 tatttataagaaaaagtcacaacttttaaggtacatttattgtttaaaagacttctctaaccctcatttaatgttggtcttttcaatattagtgggtata 38209567  T
Q  103 tttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 184  Q
    || ||||||||||||| |||||  |||||||||||||||||| ||| |||| ||| |||||| | || ||| ||||||||||    
T  38209566 ttaaatacttcacaaatttttaaaagggtatatttataaaaatatttaaaaaatttcaacaagtaatgattatcttggtttt 38209485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 184
Target Start/End: Complemental strand, 36408327 - 36408151
Alignment:
Q  7 tataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatattta 106  Q
    |||||||||||||||||||||| ||| |||||||||||||| ||| |||||| |||||||| |||||||||| ||||||||||| |||||  |||| |||    
T  36408327 tataagaaaaagtcacaacttt-aaggtacatttattgtttaacaaacttttttaaccctcgtttaatgtttgtctttttaatattagtggatataatta 36408229  T
Q  107 atacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 184  Q
    |||||| ||||| |||||||||||||||||| ||||||||||||||| |||  ||| ||| || |||||||| |||||    
T  36408228 atacttaacaaatttttatgagggtatatttgtaaaaacattcaaaaaattataactactaataattgtcttagtttt 36408151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 36054815 - 36054958
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    |||||||||||||||| ||||||||||||||| || ||||||||||| | |||||||| || |||| | ||||||||| ||||||||||| |||||  |     
T  36054815 cctatttataagaaaatgtcacaacttttaaggtatatttattgtttaaaagacttttataccccttaattaatgtttgtctttttaatattagtggatg 36054914  T
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaa 144  Q
    ||||||||||||| |||  ||| || ||||||||||||||||||    
T  36054915 tatttaatacttcccaatttttaataagggtatatttataaaaa 36054958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 55 - 184
Target Start/End: Original strand, 5923871 - 5924004
Alignment:
Q  55 ttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgaggg----tatatttataaaaacattca 150  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||||| |||||||||||    ||||||| |||||||||| |    
T  5923871 ttttctaaccctcatttaatgtttgtctttttaatattagtgtgtataattaatactttacaaatttttatgagggcatatatatttttaaaaacattta 5923970  T
Q  151 aaacattgcaacaacttatcattgtcttggtttt 184  Q
    ||| ||| | || ||| || ||| ||||||||||    
T  5923971 aaaaattactaccactaatgattatcttggtttt 5924004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 31658853 - 31659003
Alignment:
Q  2 ctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtat 101  Q
    |||||||||||||||  ||||||||||||||||  | ||||||||| | |||||||| ||||| | ||||||||||| ||||||||||| |||||  | |    
T  31658853 ctatttataagaaaatatcacaacttttaagatgtagttattgtttaaaagacttttttaacctttatttaatgtttgtctttttaatactagtggatgt 31658952  T
Q  102 atttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    ||||||| || ||  || |||||||||| ||||||| |||||| ||||||||    
T  31658953 atttaatgctgca-taatttttatgaggatatatttgtaaaaatattcaaaa 31659003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 8251235 - 8251387
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    ||||||||||||||||  |||||||||||||| |  | |||||| || | |||| ||| |  || | |||||||| || ||||||||||| ||||| ||     
T  8251235 cctatttataagaaaatatcacaacttttaaggtgtaattattgcttaaaagacctttttccccattatttaatggttgtctttttaatattagtgagtt 8251334  T
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    |||||||| ||||||||  |||||||||||||||||| |||||| ||||||||    
T  8251335 tatttaatgcttcacaattttttatgagggtatatttgtaaaaatattcaaaa 8251387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 51 - 153
Target Start/End: Original strand, 2152369 - 2152472
Alignment:
Q  51 agacttttctaaccctcatttaatgtttatcttttt-aataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattc 149  Q
    ||||||||||| |||| ||||||||||||||||||| |||| ||| | || |||||||| ||||||||  |||||| |||||||||||||||||| ||||    
T  2152369 agacttttctaccccttatttaatgtttatcttttttaatattagcgagtctatttaatgcttcacaattttttataagggtatatttataaaaatattc 2152468  T
Q  150 aaaa 153  Q
    ||||    
T  2152469 aaaa 2152472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 2207771 - 2207921
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    |||||||||| |||||  |||||| ||||||||| || ||||||  | | ||| ||||||| |||| ||||||||||| | ||||||||| || || ||     
T  2207771 cctatttata-gaaaatatcacaatttttaagatgcagttattgcgttaaagaattttctaccccttatttaatgtttgtatttttaatattaatgggtg 2207869  T
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    |||||||| |||||| || |||||||||||||||||| |||||| ||||||||    
T  2207870 tatttaatgcttcac-aatttttatgagggtatatttgtaaaaatattcaaaa 2207921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 16890420 - 16890265
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatcttttta---ataatagtgt 97  Q
    |||||||||| |||||  |||||||||||||| || | ||| ||||| | ||||||||||| || | ||||| ||||| | ||||||   ||| |||||     
T  16890420 cctatttatatgaaaatatcacaacttttaaggtatagttagtgtttcaaagacttttctaccctttatttattgtttgtttttttataaatattagtga 16890321  T
Q  98 gtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    || ||||||||  |||||||  |||||||||||||||||| |||||| ||||||||    
T  16890320 gtttatttaatgtttcacaattttttatgagggtatatttgtaaaaatattcaaaa 16890265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 1445352 - 1445504
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacat-ttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgt 99  Q
    |||||||||||||||| ||||||||||||||| |  |  |||||| || |  |||||||||| |||| ||||||||||| ||||||  ||| ||||| ||    
T  1445352 cctatttataagaaaatgtcacaacttttaaggtgtaagttattgcttaaatgacttttctatccct-atttaatgtttctcttttagatattagtgagt 1445450  T
Q  100 atatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
     ||||||||  |||||||  ||| |||| ||||||||| |||||  ||||||||    
T  1445451 gtatttaatgtttcacaatttttaatgaaggtatatttgtaaaagtattcaaaa 1445504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 153
Target Start/End: Complemental strand, 30653701 - 30653628
Alignment:
Q  80 tctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    ||||||||||| |||| ||| ||||||||  |||||||| |||||||||||||||||| |||||  ||||||||    
T  30653701 tctttttaatactagtttgtgtatttaatgtttcacaaatttttatgagggtatatttgtaaaattattcaaaa 30653628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 4641095 - 4641131
Alignment:
Q  54 cttttctaaccctcatttaatgtttatctttttaata 90  Q
    ||||||||||||||||||||||||| |||||||||||    
T  4641095 cttttctaaccctcatttaatgtttgtctttttaata 4641131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 21504927 - 21504882
Alignment:
Q  4 atttataagaaaaagtcacaacttttaagatacatttattgtttga 49  Q
    ||||||||||||| || ||||||||||||||  |||||||||||||    
T  21504927 atttataagaaaatgttacaacttttaagatgtatttattgtttga 21504882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 30112574 - 30112485
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaata 90  Q
    |||||||||||||||| ||||||| ||||||| |  | |||||| || | ||| |||| || ||||| |||||||| | |||||||||||    
T  30112574 cctatttataagaaaatgtcacaaattttaaggtgtagttattgcttaaaagatttttttatccctcgtttaatgtatgtctttttaata 30112485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 30041444 - 30041272
Alignment:
Q  11 agaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatac 110  Q
    ||||||||| |||||||| ||| || ||||||||||| | |||||||||||||||| | ||||||||| ||||||||||| |||||  ||||||||||||    
T  30041444 agaaaaagtgacaacttt-aaggtatatttattgtttaaaagacttttctaacccttaattaatgtttgtctttttaatattagtggttatatttaatac 30041346  T
Q  111 ttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 184  Q
    ||||||||  ||||||||||||||||||||||||||||||||| ||| |||| ||| || ||||||||||||||    
T  30041345 ttcacaaatctttatgagggtatatttataaaaacattcaaaaaattacaaccactaatgattgtcttggtttt 30041272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 55 - 183
Target Start/End: Original strand, 35104722 - 35104850
Alignment:
Q  55 ttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaac 154  Q
    |||||||||| ||||||||||||  |||||| |||| ||||||||||||||||||| ||| ||||||||| |||||||||||| || ||||||||||||     
T  35104722 ttttctaaccttcatttaatgttggtcttttcaatattagtgtgtatatttaatacctcaaaaaattttaagagggtatatttgtacaaacattcaaaaa 35104821  T
Q  155 attgcaacaacttatcattgtcttggttt 183  Q
    |||||||||||| || |||||||||||||    
T  35104822 attgcaacaactaataattgtcttggttt 35104850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 49983561 - 49983644
Alignment:
Q  7 tataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaata 90  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||    
T  49983561 tataagaaaaagtcacaacttttaagatacatttattgtttaaaagacttttctaaccctcatttaatgtttgtctttttaata 49983644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 63 - 153
Target Start/End: Complemental strand, 43105234 - 43105144
Alignment:
Q  63 ccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    ||||||||||||||| ||||||| |||| ||||| |||||||| |||||||||||| |||||||||||||||||| |||||||||||||||    
T  43105234 ccctcatttaatgttgatcttttcaatattagtgggtatatttgatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaa 43105144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 153
Target Start/End: Original strand, 41559992 - 41560132
Alignment:
Q  7 tataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatattta 106  Q
    ||||||||||| ||| || |||||||||||||||||  ||| | |||||||| |||| |||||||||||||| ||||| ||||| ||||| |      |     
T  41559992 tataagaaaaaatcataatttttaagatacatttatgatttaaaagacttttttaactctcatttaatgtttgtctttctaatattagtgag------tt 41560085  T
Q  107 atacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||    
T  41560086 atacttcacaaatttttatgaaggtatatttataaaaacattcaaaa 41560132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 22923629 - 22923773
Alignment:
Q  3 tatttataagaaaaagtcacaacttttaagatac---atttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgt 99  Q
    ||||||||||||||||| ||||||| ||||||||   |||||||| || |  ||| ||||||| | | |||||||  | |||||||||||| ||||  ||    
T  22923629 tatttataagaaaaagttacaacttgtaagatactatatttattggttaaaggacatttctaatcataatttaattgtgatctttttaatattagtaggt 22923728  T
Q  100 atatttaatacttcacaaaattttatgagggtatatttataaaaa 144  Q
    ||||||||||| ||||||| |||||||| ||||||||| ||||||    
T  22923729 atatttaatacatcacaaatttttatgaaggtatatttgtaaaaa 22923773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 40345079 - 40344929
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    ||||| |||||||||| ||||||||||||||| |  | | |||| || | |||||||| || |||||||||||| ||| ||||||||||| ||||| |      
T  40345079 cctatctataagaaaatgtcacaacttttaaggtgtagtcattgcttaagagacttttatacccctcatttaatatttgtctttttaatattagtgag-- 40344982  T
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    ||||||||  |||||||  |||||| ||||||||||| |||||| ||||||||    
T  40344981 tatttaatggttcacaattttttataagggtatatttgtaaaaatattcaaaa 40344929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 45261363 - 45261512
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    |||||||||||||||| ||||||||||||||| |  | |||||| || |  |||||||||| |||| ||||||||||| |||||| |||| ||||| ||     
T  45261363 cctatttataagaaaatgtcacaacttttaagctgtagttattgcttaaatgacttttctatccct-atttaatgtttctcttttaaatattagtgggtg 45261461  T
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    ||||||||  |||||  |||||| ||||||||||||| ||||||  |||||||    
T  45261462 tatttaatgtttcac--aattttttgagggtatatttgtaaaaatgttcaaaa 45261512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 184
Target Start/End: Original strand, 49983786 - 49983892
Alignment:
Q  80 tctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatattt---ataaaaacattcaaaacattgcaacaacttatcattgtc 176  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||   | |||||||||||||| ||| |||  ||| || ||||||    
T  49983786 tctttttaatattagtgggtatatttaatacttcacaaatttttatgagggtatatttgtaaaaaaaacattcaaaa-attacaatcactaatgattgtc 49983884  T
Q  177 ttggtttt 184  Q
    ||||||||    
T  49983885 ttggtttt 49983892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 166
Target Start/End: Original strand, 30577821 - 30577952
Alignment:
Q  35 acatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtata 134  Q
    ||||||||| ||| | |||| |||||| |||||||||||||||  |||||| || | ||||   |||||||||||||||||  | |||||||| ||||||    
T  30577821 acatttattatttaaaagacgtttctatccctcatttaatgttggtcttttcaacattagtagatatatttaatacttcactcatttttatgatggtata 30577920  T
Q  135 tttataaaaacattcaaaacattgcaacaact 166  Q
    ||| |||||||||| |||| ||| ||||||||    
T  30577921 tttgtaaaaacatttaaaaaattacaacaact 30577952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 43106004 - 43105935
Alignment:
Q  3 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaa 73  Q
    |||||||||||||||||||||||||||||| |  ||||||||||| | |||||||||||||||||||||||    
T  43106004 tatttataagaaaaagtcacaacttttaaggt-tatttattgtttaaaagacttttctaaccctcatttaa 43105935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 24650122 - 24650285
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    ||||||||||| ||||  | |||||||||||| || ||||||||||  | | |||||| ||||| || |||||| ||| ||||||||||| ||||| | |    
T  24650122 cctatttataaaaaaa--ttacaacttttaaggtatatttattgttaaaaaaacttttttaaccttcttttaatttttgtctttttaatattagtgagca 24650219  T
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaact 166  Q
    ||||||||| |||||||  |||||| |  |||||||| |||||  ||  |||| ||||||||||||    
T  24650220 tatttaatatttcacaattttttataaaagtatatttgtaaaagtataaaaaaaattgcaacaact 24650285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 32211936 - 32211834
Alignment:
Q  3 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtata 102  Q
    ||||||||||||||  |||||||||||||| |  | ||||||||| | ||||||||||| || | ||||||||||| ||||||||||| ||||| || ||    
T  32211936 tatttataagaaaatttcacaacttttaaggtgtagttattgtttaaaagacttttctacccgttatttaatgtttgtctttttaatattagtgggtgta 32211837  T
Q  103 ttt 105  Q
    |||    
T  32211836 ttt 32211834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 17003725 - 17003574
Alignment:
Q  1 cctatttataagaaaaa-gtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgt 99  Q
    ||||||||||| ||||| ||||||||||||||| |  | |||||| || |  ||||||| || |||| ||||||||||| |||||| |||| ||||| ||    
T  17003725 cctatttataaaaaaaatgtcacaacttttaaggtgtagttattgcttaaatgacttttttatccct-atttaatgtttctcttttaaatattagtgggt 17003627  T
Q  100 atatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
     | ||||||  |||||||  |||||||||||||||||| |||||| ||||||||    
T  17003626 gtgtttaatgtttcacaat-ttttatgagggtatatttgtaaaaatattcaaaa 17003574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 25295198 - 25295085
Alignment:
Q  4 atttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatat 103  Q
    ||||||||||||| || |||||||||||| |  | ||||||||| | |||||||| || ||||||||||||| || ||||||||||| ||||| || |||    
T  25295198 atttataagaaaatgttacaacttttaaggtgtaattattgtttaaaagacttttttatccctcatttaatgcttctctttttaatattagtgggtttat 25295099  T
Q  104 ttaatacttcacaa 117  Q
    | |||  |||||||    
T  25295098 taaatgtttcacaa 25295085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 132
Target Start/End: Original strand, 38854614 - 38854744
Alignment:
Q  2 ctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgttt-atctttttaataatagtgtgta 100  Q
    |||||||||||||||| |||||||||||||  || ||||||| || || |||||||||| |||||| |||||| |||  | |||||||||  | || |||    
T  38854614 ctatttataagaaaaattcacaacttttaaagtatatttatttttaga-agacttttctcaccctcgtttaatttttgttttttttaatatcaatgagta 38854712  T
Q  101 tatttaatacttcacaaaattttatgagggta 132  Q
     ||| ||||||||||||| |||||||| ||||    
T  38854713 aattcaatacttcacaaatttttatgaaggta 38854744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 8825506 - 8825356
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatg--tttatctttttaataatagtgtg 98  Q
    |||||||||||||||| ||||||| ||||||| |  | |||||| || | ||||||||||| || ||||||||||  ||||   |||||||| || || |    
T  8825506 cctatttataagaaaatgtcacaa-ttttaaggtgtagttattgcttaaaagacttttctatccttcatttaatgacttta---ttttaatattaatgag 8825411  T
Q  99 tatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    | |||||||| || |||||  |||||| |||||||||||||||||| ||| ||||    
T  8825410 tgtatttaatgctacacaattttttataagggtatatttataaaaatatttaaaa 8825356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 49787770 - 49787879
Alignment:
Q  28 ttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatga 127  Q
    |||||||| ||||||||||| | | |||||| |||||||| |||||||||| || |||||| | || || |||||||||||| || ||||| ||  ||||    
T  49787770 ttaagatatatttattgtttaaaatacttttataaccctcgtttaatgtttgtccttttaaaattaatgagtatatttaatattttacaaatttcaatga 49787869  T
Q  128 gggtatattt 137  Q
    |||| |||||    
T  49787870 gggtgtattt 49787879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 153
Target Start/End: Original strand, 35455309 - 35455455
Alignment:
Q  3 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtata 102  Q
    |||||||||||||| ||||||||||||||| |  | |||||| || |  |||||||||| |||| |||||||||||||  ||| |||| ||||| || ||    
T  35455309 tatttataagaaaatgtcacaacttttaaggtgtaattattgcttaaatgacttttctatccct-atttaatgtttat-atttaaatattagtgagtgta 35455406  T
Q  103 tttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    ||||||  |||||||  ||||||||  |||||||| || ||| ||||||||    
T  35455407 tttaatgtttcacaattttttatga--gtatatttgtagaaatattcaaaa 35455455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 46918611 - 46918469
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    |||||||||||||||| ||||||| |||||||  | | |||||| || | |||||||| || || ||||||||||| | ||||||||||| || ||  |     
T  46918611 cctatttataagaaaatgtcacaatttttaagg-atagttattgcttaaaagacttttttatccttcatttaatgtctgtctttttaatattaatgaatg 46918513  T
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaa 144  Q
    ||||||||  |||| || ||| ||| ||||||||||| ||||||    
T  46918512 tatttaatgtttcaaaatattctataagggtatatttgtaaaaa 46918469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 43320280 - 43320194
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatcttttta 87  Q
    |||||||||||||||| ||||||||||||||| |    ||||||||| | ||||||||||| |||  ||| ||||||| ||||||||    
T  43320280 cctatttataagaaaatgtcacaacttttaaggtgtggttattgtttaaaagacttttctagcccctattcaatgtttgtcttttta 43320194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 42279287 - 42279233
Alignment:
Q  99 tatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    ||||||||||| |||| ||| |||||||||||||||||| |||||| ||| ||||    
T  42279287 tatatttaatatttcataaatttttatgagggtatatttgtaaaaatattaaaaa 42279233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 9425503 - 9425675
Alignment:
Q  13 aaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatactt 112  Q
    ||||| ||||||||||| || || ||||||||||| | |||||||| ||| ||||||||||||||||||||||| |||||||||  ||||||||||||||    
T  9425503 aaaaaatcacaacttttgaggtatatttattgtttaaaagacttttttaatcctcatttaatgtttatctttttcataatagtgaatatatttaatactt 9425602  T
Q  113 cacaaaattttatgagggtatatttataaaaacattc-aaaacattgcaacaacttatcattgtcttggtttt 184  Q
    |||| ||||||||||| |||||||| ||||||||||| |||| |||||||||||| || ||| ||||||||||    
T  9425603 cacagaattttatgagagtatatttgtaaaaacattcaaaaaaattgcaacaactaatgattttcttggtttt 9425675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 10 - 153
Target Start/End: Original strand, 6657887 - 6658029
Alignment:
Q  10 aagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaata 109  Q
    ||||||||||||||||||| ||| |||||||||||||| |  ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  6657887 aagaaaaagtcacaacttt-aaggtacatttattgtttaaatgacttttctaaccctcatttaatgtttgtctttttaatattagtgggtatatttaata 6657985  T
Q  110 cttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    ||||||||| |||||||||||||||||| |||| ||||| ||||    
T  6657986 cttcacaaatttttatgagggtatatttgtaaatacattaaaaa 6658029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 19780230 - 19780413
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    ||||| |||||||||||||  |||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| |||||| || | ||||| |||    
T  19780230 cctatatataagaaaaagtttcaacttttaagatatatttattgtttaaaagacttttctaaccctcatttaatgtttctcttttcaaaattagtgggta 19780329  T
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 184  Q
    |||||||||||||||||| || ||    ||||||||| |||||||||| |||| ||| ||| |||| || ||| ||||||||||    
T  19780330 tatttaatacttcacaaatttataatgcggtatatttgtaaaaacattaaaaaaattacaataactaatgattatcttggtttt 19780413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 180339 - 180491
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    ||||||||||||||||  |||||| |||||||||  | |||||| || | |||||||| || |||| ||||||||||| ||||||||||| ||||   |     
T  180339 cctatttataagaaaatatcacaatttttaagatgtagttattgcttaaaagacttttataccccttatttaatgtttgtctttttaatattagtcgatg 180438  T
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    |||||||  ||||| ||  |||||| ||||||||||| |||| | ||||||||    
T  180439 tatttaacgcttcaaaattttttataagggtatatttgtaaacatattcaaaa 180491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 153
Target Start/End: Complemental strand, 34837260 - 34837147
Alignment:
Q  40 tattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttat 139  Q
    |||||||| | |||||||| || |||| |||||||| || ||||||||||| || ||  | |||| ||| ||||||||  |||||||||||||||||| |    
T  34837260 tattgtttaaaagacttttttaccccttatttaatgcttgtctttttaatattaatggatgtattgaatgcttcacaattttttatgagggtatatttgt 34837161  T
Q  140 aaaaacattcaaaa 153  Q
    ||||| ||||||||    
T  34837160 aaaaatattcaaaa 34837147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 1856752 - 1856839
Alignment:
Q  3 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaata 90  Q
    ||||||||| ||||  ||||||||||||||   || ||||||||| | ||||||||||| | |||||||||| ||| |||||||||||    
T  1856752 tatttataaaaaaatatcacaacttttaagtatcagttattgtttaaaagacttttctatctctcatttaatatttctctttttaata 1856839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 153
Target Start/End: Complemental strand, 12143771 - 12143716
Alignment:
Q  98 gtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    ||||||||||| ||||||||  |||||||||||| ||||| |||||| ||||||||    
T  12143771 gtatatttaatgcttcacaattttttatgagggtgtatttgtaaaaatattcaaaa 12143716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 181
Target Start/End: Complemental strand, 38979 - 38802
Alignment:
Q  3 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtata 102  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| | | | ||||||| |||| ||| |||||   | || | |||| |||||  |||     
T  38979 tatttataagaaaaagtcacaatttttaagatatatttattgtttaaaatatttttctagcccttattgaatgtcgtt-ttatcaatattagtggatatg 38881  T
Q  103 tttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggt 181  Q
    ||||||| ||| |||| ||||||||| |||||||| ||||||||||||||| ||||||| |||| || ||||| |||||    
T  38880 tttaatagttcccaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaagaactaatgattgttttggt 38802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 153
Target Start/End: Original strand, 131735 - 131881
Alignment:
Q  10 aagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaat- 108  Q
    ||||||||||||||||||| ||| | |||||||||||  | |||||||||||||| ||| | || |||| ||||||||||| |||||  ||||||||||     
T  131735 aagaaaaagtcacaacttt-aaggtgcatttattgttcaaaagacttttctaaccttcaataaaagtttgtctttttaatattagtggttatatttaata 131833  T
Q  109 --acttcacaaaattttatgagggtatatttat-aaaaacattcaaaa 153  Q
      |||||||||| |||||||||||||||||| | ||||||||||||||    
T  131834 atacttcacaaatttttatgagggtatatttgtaaaaaacattcaaaa 131881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 646 - 503
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    |||| |||||||||||||||||||| |||||| |  | ||||||||| | |||||||| || ||||||||||||| || || |||||||| |||||  |     
T  646 cctaattataagaaaaagtcacaacatttaaggtgtagttattgtttaaaagacttttttatccctcatttaatgattgtcgttttaatattagtggatc 547  T
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaa 144  Q
     |||||||  ||||||| ||| ||| ||||||||||| ||||||    
T  546 catttaatgtttcacaacattctataagggtatatttgtaaaaa 503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 3021 - 3164
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    |||||||||||||||| ||||||||||||||| |  | ||||||||| | ||||||||||| |||||||| |||  || ||||||||||| |||||  |     
T  3021 cctatttataagaaaatgtcacaacttttaaggtgtagttattgtttaaaagacttttctatccctcattcaataattctctttttaatattagtggatg 3120  T
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaa 144  Q
    ||||||||  ||||||| ||| ||| |||| || ||| ||||||    
T  3121 tatttaatgtttcacaacattctataagggcatgtttgtaaaaa 3164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 51273 - 51424
Alignment:
Q  2 ctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtat 101  Q
    ||||||||||| ||| ||||||||||||||| |  |||||||| || | ||| |||| || ||||||||||||  || ||||||||||  ||||  || |    
T  51273 ctatttataagtaaatgtcacaacttttaaggtgtatttattgcttaaaagatttttttatccctcatttaataattctctttttaattttagttggtgt 51372  T
Q  102 atttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    |||||||  |||||||  ||||||||||||||| || |||||| ||||||||    
T  51373 atttaatgtttcacaactttttatgagggtataattgtaaaaatattcaaaa 51424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 11691152 - 11691056
Alignment:
Q  57 ttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    ||||| |||||||||||||||| ||||||||||  ||||| || ||||||||| |||| || ||||||||||| | ||||| |||||| ||||||||    
T  11691152 ttctatccctcatttaatgtttctctttttaatcttagtgagtgtatttaatatttcataatattttatgaggatgtatttgtaaaaatattcaaaa 11691056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 27193010 - 27193153
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    |||||||||||| ||| |||||||||||||||||| | ||||||||| | |||||||| || || ||||||||||  | |||||||||||  | || |||    
T  27193010 cctatttataaggaaatgtcacaacttttaagatatagttattgtttaaaagacttttttatccttcatttaatgcatctctttttaatataactgagta 27193109  T
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaa 144  Q
    | ||||||  |||| ||  |||||||| | ||||||| ||||||    
T  27193110 tttttaatgtttcataattttttatgatgatatatttgtaaaaa 27193153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 148
Target Start/End: Original strand, 17693562 - 17693705
Alignment:
Q  2 ctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttt-tctaaccctcatttaatgtttatctttttaataatagtgtgta 100  Q
    ||||||||||||||| ||||||| |||||||||  |||||||   | | ||||||| | ||  ||||||| |||||||||| |||||||| |||||  ||    
T  17693562 ctatttataagaaaatgtcacaatttttaagatgtatttattacataaaagactttctttagtcctcattcaatgtttatcattttaatactagtggata 17693661  T
Q  101 tatttaatacttcacaaaattttatgagggtatatttataaaaacatt 148  Q
    ||||    |||||| ||||||||| |||||||||||| ||||||||||    
T  17693662 tatt----acttcataaaattttacgagggtatatttgtaaaaacatt 17693705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 3257354 - 3257251
Alignment:
Q  5 tttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatt 104  Q
    ||||||||||||  ||||||||||||||    |  |||||||| | ||||||||||| | || ||||||||||| ||||||||||| |||||  ||||||    
T  3257354 tttataagaaaatatcacaacttttaaggcgtaactattgtttaaaagacttttctatctcttatttaatgtttgtctttttaatattagtggatatatt 3257255  T
Q  105 taat 108  Q
    ||||    
T  3257254 taat 3257251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 1963008 - 1962962
Alignment:
Q  1 cctatttataagaaaaagtcacaacttttaagatacatttattgttt 47  Q
    ||||||||||||||||||| ||||||||||| ||| |||||||||||    
T  1963008 cctatttataagaaaaagtgacaacttttaaaatatatttattgttt 1962962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 6688792 - 6688924
Alignment:
Q  7 tataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatcttttta--ataatagtgtgtatatt 104  Q
    ||||||||||  |||||||||||||| |  | ||||||||| | ||||||||||| |||| ||||||| | | | ||||||  ||| ||||  || ||||    
T  6688792 tataagaaaatatcacaacttttaaggtgtagttattgtttaaaagacttttctatcccttatttaatatgtttgtttttaatatattagtaagtgtatt 6688891  T
Q  105 taatacttcacaaaattttatgagggtatattt 137  Q
    |||| ||| ||||  ||||||||||||||||||    
T  6688892 taatgctttacaattttttatgagggtatattt 6688924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 3629355 - 3629215
Alignment:
Q  4 atttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatat 103  Q
    ||||||||||||| ||||||||||||||| |  | |||||  || | |||||||| || |||| ||||||||  | | ||||||||| |||||  | |||    
T  3629355 atttataagaaaatgtcacaacttttaaggtgtagttattacttaaaagacttttgtatccctaatttaatgactgtatttttaatattagtgaatgtat 3629256  T
Q  104 ttaatacttcacaaaattttatgagggtatatttataaaaa 144  Q
    |||||  ||||||| ||| ||| ||| ||||||| ||||||    
T  3629255 ttaatgtttcacaacattctataaggttatatttgtaaaaa 3629215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 154
Target Start/End: Original strand, 17686233 - 17686384
Alignment:
Q  3 tatttataagaaaaa-gtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtat 101  Q
    ||||||||||||||| |||| |||||||||| |  ||||| | | | | ||||||||  || |||| ||||||||| |||||||||||| |||||   |     
T  17686233 tatttataagaaaaaagtcataacttttaaggtgtatttactatataaaagactttttcaatcctcctttaatgtt-atctttttaatactagtggaaac 17686331  T
Q  102 atttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaac 154  Q
    ||||||||||||| |   |||||||| |||||| || |||||||||| |||||    
T  17686332 atttaatacttcatatgtttttatgaaggtatacttgtaaaaacatttaaaac 17686384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 2225619 - 2225722
Alignment:
Q  41 attgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttata 140  Q
    ||||||| | ||||||||||| |  | ||||||||||| | ||||||||| |||||  | ||||||||  |||||||  |||||||| ||||||||| ||    
T  2225619 attgtttaaaagacttttctaccatttatttaatgtttttgtttttaatattagtggttgtatttaatgtttcacaactttttatgaaggtatatttgta 2225718  T
Q  141 aaaa 144  Q
    ||||    
T  2225719 aaaa 2225722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 11983709 - 11983614
Alignment:
Q  22 caacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaa 117  Q
    ||||||||||| |  | ||||||||| | ||| |||| || |||||||||||||||| ||||||||||| |||||  | ||||||||  |||||||    
T  11983709 caacttttaaggtgtaattattgtttaaaagatttttttacccctcatttaatgtttctctttttaatattagtggatgtatttaatgtttcacaa 11983614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 153
Target Start/End: Original strand, 18705003 - 18705150
Alignment:
Q  6 ttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatattt 105  Q
    |||||||||||  ||| |||||||||| |  | |||||  || | |||||||| || || | ||||||||||| | ||||||||| || |  || |||||    
T  18705003 ttataagaaaacatcataacttttaaggtgtagttattacttaaaagacttttttaccctttatttaatgtttttgtttttaatattaataggtgtattt 18705102  T
Q  106 aatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 153  Q
    ||| ||||||||  |||||| ||| ||||||| |||||| ||||||||    
T  18705103 aatgcttcacaactttttataaggatatatttgtaaaaatattcaaaa 18705150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 14917792 - 14917865
Alignment:
Q  68 atttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaa 144  Q
    |||||||||||| | ||||||||||   |||| |||||||| ||||||||  ||||| |||||||||||| ||||||    
T  14917792 atttaatgtttagccttttaataat---gtgtgtatttaattcttcacaattttttacgagggtatatttgtaaaaa 14917865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 151
Target Start/End: Original strand, 154340 - 154489
Alignment:
Q  2 ctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtat 101  Q
    |||||||||||||||  | |||||||||||| |  | ||||||||| | |||| ||| || |  | ||||||||||| ||||||||||| | ||| || |    
T  154340 ctatttataagaaaatattacaacttttaaggtgtagttattgtttaaaagacctttttaccttttatttaatgtttgtctttttaatattggtgggtgt 154439  T
Q  102 atttaatacttcacaaaattttatgagggtatatttataaaaacattcaa 151  Q
    ||||||| |||||||   ||||||||||| || ||| |||||| ||||||    
T  154440 atttaatgcttcacagttttttatgagggcatgtttgtaaaaatattcaa 154489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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