View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_high_43 (Length: 243)
Name: NF1422_high_43
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 45684669 - 45684441
Alignment:
| Q |
1 |
cattcctaaggtatgtcttgcctttgtacttaattttaacaactattatgttgtgatatttggcacttgattaccccaattaaggatctcgttgtagtcc |
100 |
Q |
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| T |
45684669 |
cattcctaaggtatgtcttgcctttgtacttaattttaacaactattatgttgtgatatttggcacttgattaccccaattaaggatctcgttgtagtcc |
45684570 |
T |
|
| Q |
101 |
aacactaacagtttcttttggtcggttggatttattgtttgagaatcttgattattgtgattcttatttcatgaatgtttgcattatagaattattagca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45684569 |
aacactaacagtttcttttggtcggttggatttattatttgagaatcttgattattgtgattcttatttcattaatgtttgcattatagaattattagca |
45684470 |
T |
|
| Q |
201 |
ttgctatctatgactgtagcgtacttgct |
229 |
Q |
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|| |||||||||||||||||||||||||| |
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| T |
45684469 |
tttctatctatgactgtagcgtacttgct |
45684441 |
T |
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