View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_high_52 (Length: 225)
Name: NF1422_high_52
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_high_52 |
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| [»] scaffold0350 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 15447596 - 15447533
Alignment:
| Q |
147 |
ccataaacatatggcaaaagtcgtaagccaactttgtacaggttctttaaactatcgtcctatg |
210 |
Q |
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| T |
15447596 |
ccataaacatatggcaaaagtcgtaagccaactttgtacaggttctttaaactatcgtcctatg |
15447533 |
T |
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Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 15447681 - 15447620
Alignment:
| Q |
69 |
tacaccgacgcactaaacatttatttatatcttgtgtttggttaatgtaacttcccttaaac |
130 |
Q |
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| T |
15447681 |
tacaccgacgcactaaacatttatttagatgttgtgtttggttaatgaaacttcccttaaac |
15447620 |
T |
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Target: scaffold0350 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0350
Description:
Target: scaffold0350; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 1284 - 1319
Alignment:
| Q |
19 |
atatgtaaggtctggagttcaaactccggtcaccac |
54 |
Q |
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| T |
1284 |
atatgtaaggtctggagttcaaactccggccaccac |
1319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 6038300 - 6038265
Alignment:
| Q |
19 |
atatgtaaggtctggagttcaaactccggtcaccac |
54 |
Q |
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| T |
6038300 |
atatgtaaggtctggagttcaaactccggccaccac |
6038265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 30753762 - 30753797
Alignment:
| Q |
19 |
atatgtaaggtctggagttcaaactccggtcaccac |
54 |
Q |
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| T |
30753762 |
atatgtaaggtctggagttcaaactccggccaccac |
30753797 |
T |
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