View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_high_55 (Length: 206)
Name: NF1422_high_55
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_high_55 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 10 - 189
Target Start/End: Original strand, 51547990 - 51548169
Alignment:
| Q |
10 |
aggagcagagaagcatcaagcagttgcattaagagtgaatgcagacgtaacagctttttacaaatgtgcaatgtatggttaccaagacacactttatgtt |
109 |
Q |
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| T |
51547990 |
aggaccagagaagcatcaagcagttgcattaagagtgaacgcagacgtaacagctttttacaaatgtgcaatgtatggttaccaagacacactttatgtt |
51548089 |
T |
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| Q |
110 |
cactcatttagacaattctatagagagtgtgatatttttgggaccatagattacatatttggaaatgcagcagtagtttt |
189 |
Q |
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| T |
51548090 |
cactcatttagacaattctatagagagtgtgacatttttgggaccatagattacatatttggaaatgcagcagtagtttt |
51548169 |
T |
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Target: chr2 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 19476428 - 19476599
Alignment:
| Q |
15 |
cagagaagcatcaagcagttgcattaagagtgaatgcagacgtaacagctttttacaaatgtgcaatgtatggttaccaagacacactttatgttcactc |
114 |
Q |
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||||||| ||||||||||||||||||||||| |||||||| ||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||| |
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| T |
19476428 |
cagagaaacatcaagcagttgcattaagagtaaatgcagatttaacagcattttacaaatgcgcaatttatggttaccaagacacactttatgtccactc |
19476527 |
T |
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| Q |
115 |
atttagacaattctatagagagtgtgatatttttgggaccatagattacatatttggaaatgcagcagtagt |
186 |
Q |
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| T |
19476528 |
attcagacaattctaccgcgaatgcgacatttacgggacaatagatttcatatttggtaacgccgcagtagt |
19476599 |
T |
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