View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_high_56 (Length: 205)
Name: NF1422_high_56
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_high_56 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 7e-85; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 15685019 - 15684813
Alignment:
| Q |
1 |
ttggtttatatctaaataattattaaaatatgagcaaacacaattttgtcttaaannnnnnnaaatacaattatcataactttatattttatggtttatt |
100 |
Q |
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| T |
15685019 |
ttggtttatatctaaataattgttaaaatatgagcaaacacaattttgtcttaaatttttttaaatacaattatcataactttatattttatggtttatt |
15684920 |
T |
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| Q |
101 |
gattgaaatgaaaaact--gttatagacataccaaaacctttgtttgaccatagtttctgttttgtatattttaggtcggaataaatgaagagaattgtg |
198 |
Q |
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| T |
15684919 |
gattgacatgaaaaactatgttatagacataccaaaacctttgtttgaccatagtttctgttgtgtatattttaggtcggagtaaatgaagagaattgtg |
15684820 |
T |
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| Q |
199 |
cagcagt |
205 |
Q |
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| T |
15684819 |
cagcagt |
15684813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 15620061 - 15619991
Alignment:
| Q |
125 |
acataccaaaacctttgtttgaccatagtttctgttttgtatattttaggtcggaataaatgaagagaatt |
195 |
Q |
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| T |
15620061 |
acataccaaaacgtttgtttgatcatagtttctgtcatgtatattttaggtcgaaataaaggaagagaatt |
15619991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 15620607 - 15620553
Alignment:
| Q |
63 |
aaatacaattatcataactttatattttatggtttattgattgaaatgaaaaact |
117 |
Q |
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| T |
15620607 |
aaatacaattatcataactttatagtttatgatttattgattgacatgaaaaact |
15620553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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