View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_low_1 (Length: 661)
Name: NF1422_low_1
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_low_1 |
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| [»] scaffold0318 (1 HSPs) |
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Alignment Details
Target: scaffold0318 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: scaffold0318
Description:
Target: scaffold0318; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 13 - 643
Target Start/End: Complemental strand, 15504 - 14877
Alignment:
| Q |
13 |
atgaggtgtctttatcatcttttccaacactatgatcaaatttgcatagtgtaaagccagagctgaagcacctaaagtactaggaggtggtttcaaaagc |
112 |
Q |
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| T |
15504 |
atgaggtgtctttatcatcttttccaacactatgatcaaatttgcatagtgtaaagccaaagctgaagcacctaaagtactaggaggtggtttcaaaagc |
15405 |
T |
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| Q |
113 |
tttgaatttgactcaaaaaacccacttcccaatcctaaaccatccttgatcacatcaagctctgggctttccaatgacccagaaacgaattcatgacaag |
212 |
Q |
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| T |
15404 |
tttgaatttgactcaaaaaacccagttcccaatcctaaaccatccttgatcacatcaagctctgggctttccaatgacccagaaacgaattcatgacaag |
15305 |
T |
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| Q |
213 |
aatttggattctgatcagatggataaactgctgcagaagttggtgacaaacaaggcatagaatgaccaatcccaaacacaaccttaatccttgctaaaac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15304 |
aatttggattctgatcagatggataaactgctgcagaagttgctgacaaacaaggcatggaatgaccaatcccaaacacaaccttaatccttgctaaaac |
15205 |
T |
|
| Q |
313 |
agtgaaacaaaacctcacaagtaacaaaacaacaccatcaaaacttctactccacaaacacctatctttcagatcctttacttcttgtttctgccaacaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15204 |
agtgaaacaaaacctcacaagtaacaaaacaacaccatcaaaacttctactccacaaacacctatctttcagatccttaacttcttgtttctgccaacaa |
15105 |
T |
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| Q |
413 |
atcttctgctgaagttcataaattttctgttcttttccaacgcccaaagaaccttcatttccttcactacaactattcctacgatgatgatggtgatgat |
512 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15104 |
atcttctgctgaagttcataaattttctgctcttttccaacaccaaaagaactttcatttccttcactacaactattcctacgatgatga---tgatgat |
15008 |
T |
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| Q |
513 |
tcaaattcaaagcttttctaaacccattttccaaaacagaaagctcttccatttcacggtgtaaagttgccgtaagcatcacgtaacgttccatttttct |
612 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15007 |
tcaaattcaaagcttttctaaacccattttctaaaacagaaagctcttccatttcacggtgtaaagttgccgtaagcatcacgtaacgttccatttttct |
14908 |
T |
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| Q |
613 |
aaacttagcttcaatttccttaggcccagaa |
643 |
Q |
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||||||||||||||||||||| ||||||||| |
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| T |
14907 |
aaacttagcttcaatttccttcggcccagaa |
14877 |
T |
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