View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_low_10 (Length: 398)
Name: NF1422_low_10
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 134 - 388
Target Start/End: Complemental strand, 40546686 - 40546422
Alignment:
| Q |
134 |
aattattcaatgatcatcaagtattgatcatttgatttgtcaaaggcacacacaacacaatccaacttaattaggattcaaagttctcttctccacgaac |
233 |
Q |
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| T |
40546686 |
aattattcaatgatcatcaagtattgatcatttgatttgtcaaaggcacacacaacacaatccaacttaattaggattcaaagttctcttctccacgaac |
40546587 |
T |
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| Q |
234 |
atcttttgtttctctctc----------tatatctcttcaatgtattgatcattagttaccttcaaccttgagcaataatttgatgaagtatattgcata |
323 |
Q |
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| T |
40546586 |
atcttttgtttctctctctctctctctatatatctcttcaatgtattgatcattagttaccttcaaccttgagcaataatttgatgaagtatattgcata |
40546487 |
T |
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| Q |
324 |
caaacaattcggttaaaatatgttaggatgcaannnnnnnnattaaattaataatgttagaatta |
388 |
Q |
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| T |
40546486 |
caaacaattcggttaaaatatgttaggatgcaattttttttattaaattaataatgttagtatta |
40546422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 40546804 - 40546736
Alignment:
| Q |
17 |
atttataaatgatgccaaaagaatttgtcttcttcaatatagccgagtcttgagaacttggtctagtgg |
85 |
Q |
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| T |
40546804 |
atttataaatgatgccaaaagaatttgtcttcttcaatatagccgagtcttgagaacttggtctagtgg |
40546736 |
T |
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