View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_low_11 (Length: 396)
Name: NF1422_low_11
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_low_11 |
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| [»] scaffold0088 (1 HSPs) |
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| [»] scaffold0329 (1 HSPs) |
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Alignment Details
Target: scaffold0088 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: scaffold0088
Description:
Target: scaffold0088; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 386
Target Start/End: Complemental strand, 51997 - 51638
Alignment:
| Q |
16 |
aaaagttggtgaataaagaacatggctaagataaaaatgtgaagtaaaatagatagtgccaccataatgaaccaaaattgaatttccattagataaagaa |
115 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
51997 |
aaaagttggtgaataaagaacatggctgagataaatatgtgaagtaaaagagatagtgccaccataatgaaccaaaattgaatttctattagataaagaa |
51898 |
T |
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| Q |
116 |
acgtgacccaatttaattaattctataaaagaaactataacaagatagattgcaacaaacatgttcattacctcctggatcaaggagtaaaacttgtgtt |
215 |
Q |
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|| ||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
51897 |
acatgaaccagtttaatt----ctataaaagaaactataacaagatagattgcaacaaacatgttcattagctcctggatcaaggagtaaaacttgtgtt |
51802 |
T |
|
| Q |
216 |
ttgacagttgaaaactgatcattgagacatgtaagaaactgcatgatctgatcctcattcctatgagttttggcaaatgtagaagcttcacaacgaaatg |
315 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
51801 |
ttgacaattgaaaactgatcattgagacatgtaagaaactgcatgatctgatcctcattcctatgagttttggcaaacgtagaagcttcacaacgaa--g |
51704 |
T |
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| Q |
316 |
tatcatgtatgaatgcaaactcagctaggaaaaggtctgtgtgaagctaattcttcccaaagtgtcttcat |
386 |
Q |
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| T |
51703 |
ta-----tatgaatgcaaacacagctaggaataggtctgtgtgaagctaattcttcccaaagtgtcttcat |
51638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 227 - 386
Target Start/End: Complemental strand, 29498245 - 29498093
Alignment:
| Q |
227 |
aaactgatcattgagacatgtaagaaactgcatgatctgatcctcattcctatgagttttggcaaatgtagaagcttcacaacgaaatgtatcatgtatg |
326 |
Q |
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||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| |||| | ||||||||||||||||| ||||| || |
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| T |
29498245 |
aaactgatcattgagacctgtaagaaactgcatgatctagtcgtcattcctatgagttttagcaactctagaagcttcacaacga-------catgtgtg |
29498153 |
T |
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| Q |
327 |
aatgcaaactcagctaggaaaaggtctgtgtgaagctaattcttcccaaagtgtcttcat |
386 |
Q |
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||| || || ||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
29498152 |
aatccatgaacaactaggaatgggtctgtgtgaagctaattcttcccaaagtgccttcat |
29498093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 29498973 - 29498877
Alignment:
| Q |
20 |
gttggtgaataaagaacatggctaagataaaaatgtgaagtaaaatagatagtgccaccataatgaaccaaaattgaatttccattagataaagaaac |
117 |
Q |
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|||||||||||||||||||| || |||||||||| ||||||||| | | | ||| |||||| ||||||||| ||||||||||||| ||||||||| |
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| T |
29498973 |
gttggtgaataaagaacatgactgagataaaaattggaagtaaaagaagcaataccagcataat-aaccaaaatggaatttccattaggtaaagaaac |
29498877 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 192 - 311
Target Start/End: Complemental strand, 12284123 - 12284004
Alignment:
| Q |
192 |
ggatcaaggagtaaaacttgtgttttgacagttgaaaactgatcattgagacatgtaagaaactgcatgatctgatcctcattcctatgagttttggcaa |
291 |
Q |
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|||||||| ||||| |||||||| | ||| | ||||||| ||||||||||| ||| ||||||||||| ||||| |||||||| ||||||||||| |||| |
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| T |
12284123 |
ggatcaagaagtaacacttgtgtccttacaatggaaaactaatcattgagacctgtgagaaactgcataatctggtcctcatttctatgagttttagcaa |
12284024 |
T |
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| Q |
292 |
atgtagaagcttcacaacga |
311 |
Q |
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| T |
12284023 |
cccttgaagcttcacaacga |
12284004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 192 - 311
Target Start/End: Original strand, 19588168 - 19588287
Alignment:
| Q |
192 |
ggatcaaggagtaaaacttgtgttttgacagttgaaaactgatcattgagacatgtaagaaactgcatgatctgatcctcattcctatgagttttggcaa |
291 |
Q |
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|||||||| ||||| |||||||| | ||| | ||||| ||||||||||||| ||| ||||||||||| ||||| |||||||| ||||||||||| |||| |
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| T |
19588168 |
ggatcaagaagtaacacttgtgtccttacaatggaaaattgatcattgagacctgtgagaaactgcataatctggtcctcatttctatgagttttagcaa |
19588267 |
T |
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| Q |
292 |
atgtagaagcttcacaacga |
311 |
Q |
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| T |
19588268 |
cccttgaagcttcacaacga |
19588287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 311
Target Start/End: Complemental strand, 9832 - 9713
Alignment:
| Q |
192 |
ggatcaaggagtaaaacttgtgttttgacagttgaaaactgatcattgagacatgtaagaaactgcatgatctgatcctcattcctatgagttttggcaa |
291 |
Q |
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|||||||| ||||| |||||||| | ||| | ||||| ||||||||||||| ||| ||||||||||| || || |||||||| |||||| |||| |||| |
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| T |
9832 |
ggatcaagaagtaacacttgtgtccttacaatggaaaattgatcattgagacctgtgagaaactgcataatttggtcctcatttctatgaattttagcaa |
9733 |
T |
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| Q |
292 |
atgtagaagcttcacaacga |
311 |
Q |
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| ||||||||||||||| |
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| T |
9732 |
cctttgaagcttcacaacga |
9713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 311
Target Start/End: Original strand, 22178399 - 22178518
Alignment:
| Q |
192 |
ggatcaaggagtaaaacttgtgttttgacagttgaaaactgatcattgagacatgtaagaaactgcatgatctgatcctcattcctatgagttttggcaa |
291 |
Q |
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|||||||| ||||| |||||||| | ||| | ||||| ||||||||||||| ||| ||||||||||| || || |||||||| |||||| |||| |||| |
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| T |
22178399 |
ggatcaagaagtaacacttgtgtccttacaatggaaaattgatcattgagacctgtgagaaactgcataatttggtcctcatttctatgaattttagcaa |
22178498 |
T |
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| Q |
292 |
atgtagaagcttcacaacga |
311 |
Q |
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| ||||||||||||||| |
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| T |
22178499 |
cctttgaagcttcacaacga |
22178518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 311
Target Start/End: Complemental strand, 52776503 - 52776384
Alignment:
| Q |
192 |
ggatcaaggagtaaaacttgtgttttgacagttgaaaactgatcattgagacatgtaagaaactgcatgatctgatcctcattcctatgagttttggcaa |
291 |
Q |
| |
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|||||||| ||||| |||||||| | ||| | ||||| ||||||||||||| || ||||||||||| || || |||||||| |||||| |||| |||| |
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| T |
52776503 |
ggatcaagaagtaacacttgtgtccttacaatggaaaattgatcattgagaccggtgagaaactgcataatttggtcctcatttctatgaattttagcaa |
52776404 |
T |
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| Q |
292 |
atgtagaagcttcacaacga |
311 |
Q |
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| T |
52776403 |
cctttgaagcttcacaacga |
52776384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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