View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_low_12 (Length: 384)
Name: NF1422_low_12
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 40086910 - 40086539
Alignment:
| Q |
1 |
atcttcttcgatgtattaccagtgttgtatttgtgacggctacaacatgaacaatagatttcaataataaggttgaaggagtcataccatactcatcaat |
100 |
Q |
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| T |
40086910 |
atcttcttcgatgtattaccagtgttgtatttgtgacggctacaacatgaacaatagatttcaataagaaggttgaaggagtcataccatactcatcaat |
40086811 |
T |
|
| Q |
101 |
cggtgcatcaaaatcataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtactgtttttagtcaagcaatgaaaaa |
200 |
Q |
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| T |
40086810 |
cggtgcatcaaaatcataacttgttgcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtactgtttttagtcaagcaatgaaaaa |
40086711 |
T |
|
| Q |
201 |
tgatacaatatcagctaattcctcttagagccaatttttcagtgaagtaatattatcatattaagttgaacttgtgaagaacatttcaggttgcaatacc |
300 |
Q |
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| T |
40086710 |
tgatacagtatcagctaattcctcttagagccaatttttcagtgaagtaatattatcatattattctgaacttgtgaagaacatttcaggttgcaatacc |
40086611 |
T |
|
| Q |
301 |
atatagtaattttgaaatgtaccgcctcgttggaaaaagcgtgcgacagcaaatgcgagatcttccacaggt |
372 |
Q |
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| T |
40086610 |
atatagtaattttgaaatgttccacctcgttggaaaaagcgtgcgacagcaaatgcgagatcttccacaggt |
40086539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 372
Target Start/End: Complemental strand, 40079125 - 40078766
Alignment:
| Q |
13 |
gtattaccagtgttgtatttgtgacggctacaacatgaacaatagatttcaataataaggttgaaggagtcataccatactcatcaatcggtgcatcaaa |
112 |
Q |
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| T |
40079125 |
gtattaccagtggtgcatttgcgatggctacaacatgaacaaaatatactcgtattaaggttgaaagagtcataccatactcatcaatcggtgcatcata |
40079026 |
T |
|
| Q |
113 |
atcataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtactgtttttagtcaagcaatgaaaaatgatacaatatc |
212 |
Q |
| |
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||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||| | ||| |
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| T |
40079025 |
atcataacttgtagcaatgaaaggtccgccggtacttcggtcaaagttggttcctccatggtactgtttttgggcaagcaataaaaaatgataaagtatt |
40078926 |
T |
|
| Q |
213 |
agctaattcctcttagagccaatttttcagtgaagtaatattatcatattaagttgaacttgtgaagaacatttcaggttgcaataccatatagtaattt |
312 |
Q |
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| T |
40078925 |
agctaattcctcttagagccaatttttccgtgaagtaatactatcatataaaattgaacttgcgaacaacatttcaggttgcaataccatatagtagttt |
40078826 |
T |
|
| Q |
313 |
tgaaatgtaccgcctcgttggaaaaagcgtgcgacagcaaatgcgagatcttccacaggt |
372 |
Q |
| |
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|||||||| || || ||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
40078825 |
tgaaatgttccaccacgttggaaaaagcgtgccacagcaaatgcaagatcttccacaggt |
40078766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 40061011 - 40060644
Alignment:
| Q |
1 |
atcttcttcgatgtattaccagtgttgtattt-gtgacggctacaacatgaacaatagat-ttcaataataaggttgaaggagtcataccatactcatca |
98 |
Q |
| |
|
|||||||||||||||||||| ||| | |||| |||| ||||||||||||||||| | || || | || ||| ||||||| ||||||||| |||||| |
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| T |
40061011 |
atcttcttcgatgtattaccggtggtacattttgtgatggctacaacatgaacaacatatatttagtatgtaggctgaagga--cataccatattcatca |
40060914 |
T |
|
| Q |
99 |
atcggtgcatcaaaatcataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtactgtttttagtcaagcaatgaaa |
198 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| || ||||| ||| |
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| T |
40060913 |
atcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggtcaaagttggttcctccatggtactgtttttgagcaggcaataaaa |
40060814 |
T |
|
| Q |
199 |
aatgatacaatatcagctaattcctcttagagccaatttttcagtgaagtaatattatcatattaagttgaacttgtgaagaacatttcaggttgcaata |
298 |
Q |
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||||||||| ||||| ||||||||||||| | | || || | |||| || ||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
40060813 |
aatgatacagtatcaactaattcctcttaaaaactggccttaag---aacaataccat-atagtaaattgaacttgtgaagaacatttcaggttgcaata |
40060718 |
T |
|
| Q |
299 |
ccatatagtaattttgaaatgtaccgcctcgttggaaaaagcgtgcgacagcaaatgcgagatcttccacaggt |
372 |
Q |
| |
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|||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
40060717 |
ccatatagtaattttgaaatgttccacctcgttggaaaaagcgtgccacagcaaatgcaagatcttccacaggt |
40060644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 22014420 - 22014519
Alignment:
| Q |
83 |
cataccatactcatcaatcggtgcatcaaaatcataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtactgtttt |
182 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||| || | |||||| ||||| || || |||| ||||||| || ||||||||||||| |||| |
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| T |
22014420 |
cataccatactcatcaatgggtgcatcataatcataactcgttgaaatgaaaggtccacccgttgttcgaccaaagttagtccctccatggtactatttt |
22014519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 52548938 - 52548999
Alignment:
| Q |
116 |
ataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtact |
177 |
Q |
| |
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|||||||||||||||||| ||||| |||| | |||| |||||||| ||||||||||| |||| |
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| T |
52548938 |
ataacttgtagcaatgaagggtccaccagaagttcgatcaaagttagttcctccatgatact |
52548999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 35259417 - 35259377
Alignment:
| Q |
85 |
taccatactcatcaatcggtgcatcaaaatcataacttgta |
125 |
Q |
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| T |
35259417 |
taccatactcatcaattggagcatcataatcataacttgta |
35259377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 177
Target Start/End: Complemental strand, 52647440 - 52647348
Alignment:
| Q |
85 |
taccatactcatcaatcggtgcatcaaaatcataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtact |
177 |
Q |
| |
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||||||| |||||||| || |||||| | ||||| ||||||| ||||||||| || |||| ||| |||| ||||||||||||||||||| |
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| T |
52647440 |
taccatattcatcaattggagcatcatagtcatagcttgtagaaatgaatggacccccagctgatcgtccaaaattggttcctccatggtact |
52647348 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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