View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_low_14 (Length: 373)
Name: NF1422_low_14
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 11609443 - 11609109
Alignment:
| Q |
1 |
aaaattttcttcggctgtaagggtgacatacctattacgccaaaacctaagcttattgtctacaacgtttaacataggtttcaaagtgaaacaattcctt |
100 |
Q |
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|||||||||||| ||| ||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11609443 |
aaaattttcttccgctataaggctgacatacctattatgccaaaacctaatcttattgtctacaacgtttaacataggtttcaaagtgaaacaattcctt |
11609344 |
T |
|
| Q |
101 |
aggtttgcactaatcgaaagcccgcgatacaagaaagacatcgaccctgggttccaaatcaagaagctaaactacaaaagtagaaaagaagaaaagggga |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11609343 |
aggtttgcactaatcgaaagcccgagatacaagaaaggcatcgaccttgagttccaaatcaagaagctaaactacaaaagtagaaaagaagaaaagggga |
11609244 |
T |
|
| Q |
201 |
gctacatttgccctaacttaaa-atttgagaagttggcatcaaatttgaaaatgattgaaaccattttagattcattttgattacacataagttctccac |
299 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11609243 |
gctacatttgccctaacttaaatttttgagaagttggcatcaaatttgaaaataattgaaaccactttagattcattttgattacacataagttctccac |
11609144 |
T |
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| Q |
300 |
acaaatgaggtgcatcatatcttcatttgaaatga |
334 |
Q |
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| T |
11609143 |
acaaatgaggtgcatcatatcttcatttgaaatga |
11609109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 11598896 - 11598635
Alignment:
| Q |
1 |
aaaattttcttcggctgtaagggtgacatacctattacgccaaaacctaagcttattgtctacaacgtttaacataggtttcaaagtgaaacaattcctt |
100 |
Q |
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||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||| ||| |
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| T |
11598896 |
aaaattttctttcgctataaggctgacatacctattacgccaaaacctaagcctattgtgtagaacgtttaacataggtttcaaagtgaaacaattactt |
11598797 |
T |
|
| Q |
101 |
aggtttgcactaatcgaaagcccgcgatacaagaaagacatcgaccctgggttccaaatcaagaagctaaactacaaaagtagaaaagaagaaaagggga |
200 |
Q |
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| T |
11598796 |
aggtttgcactaatcgaaagaccgagatacgagaaaggcatcaaccctcagatgtaaatcaacaagct-aactacagaagt--acaagaacaaaaggggg |
11598700 |
T |
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| Q |
201 |
gctacatttgccctaa----cttaaaatttgagaagttggcatcaaatttgaaaatgattgaaac |
261 |
Q |
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||||| |||||||||| | |||| |||||||||||||| ||||||||||||| |||||||| |
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| T |
11598699 |
gctacgtttgccctaataagcctaaatattgagaagttggcaccaaatttgaaaataattgaaac |
11598635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 5 - 261
Target Start/End: Complemental strand, 11586303 - 11586046
Alignment:
| Q |
5 |
ttttcttcggctgtaagggtgacatacctattacgccaaaacctaagcttattgtctacaacgtttaacataggtttcaaagtgaaacaattccttaggt |
104 |
Q |
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||||||| ||| ||||| |||||| |||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||| |||||||||||| |
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| T |
11586303 |
ttttctttcgctataaggctgacatgcctattacgccaaaacctaagcctattgtgtagaacgtttaacataggtttcaaagtgaaagaattccttaggt |
11586204 |
T |
|
| Q |
105 |
ttgcactaatcgaaagcccgcgatacaagaaagacatcgaccctgggttccaaatcaagaagctaaactacaaaagtagaaaagaagaaaaggggagcta |
204 |
Q |
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||||||||||||||| ||| ||||| |||||| |||| |||||| | | ||||||| ||||| ||||||| |||| | ||||| ||||||| |||| |
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| T |
11586203 |
ttgcactaatcgaaaaaccgagatacgagaaaggcatcaaccctgagatgtaaatcaacaagct-aactacagaagt--acaagaacaaaagggaggcta |
11586107 |
T |
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| Q |
205 |
catttgccctaa----cttaaaatttgagaagttggcatcaaatttgaaaatgattgaaac |
261 |
Q |
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| T |
11586106 |
catttgccctaataagcctaaatattgagaagttggcaccaaatttgaaaataattgaaac |
11586046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 11598628 - 11598570
Alignment:
| Q |
297 |
cacacaaatgaggtgcatcatatcttcatttgaaatgacatggaaggaagtgtaggaaa |
355 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
11598628 |
cacacaaatgaggtgcatcatatgttcatttgaaatgacatggacggaagtgtaggaaa |
11598570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 11586039 - 11585978
Alignment:
| Q |
297 |
cacacaaatgaggtgcatcatatcttcatt---tgaaatgacatggaaggaagtgtaggaaa |
355 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||| |
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| T |
11586039 |
cacacaaatgaggtgcatcatatgttcattatttgaaatgacatggacggaagtgtaggaaa |
11585978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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