View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_low_15 (Length: 371)
Name: NF1422_low_15
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 368
Target Start/End: Complemental strand, 51360074 - 51359723
Alignment:
| Q |
17 |
agaaggcataacagcatcatcttctccaacttctaacaactattccgatgacgaagttttgaatatccgcttccgtcgcatcatcctcaatcttctccac |
116 |
Q |
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| T |
51360074 |
agaaggcataacagcatcatcttctccaacttctaacaactattccgatgacgaagttttgaatatccgcttccgtcgcatcatcctcaatcttctccac |
51359975 |
T |
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| Q |
117 |
acttacttcctcccttcttccgccggattagagaaagaagtcggtgctgcagtcagactcatctcttacacggccaaaaataatcccggagtcttctatc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
51359974 |
acttacttcctcccttcttccgccggattagagaaagaagtcggtgctgcagtcagactcatctcttacacggccaaaaataatcccggtgtcttctatc |
51359875 |
T |
|
| Q |
217 |
acggcaaagccactggggttttacctgtcattgctcctttgctcccttttctcgccgatcctctttttagctctcgtcatggtatcttctttgaaactat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51359874 |
acggcaaagccactggggttttacctgtcattgctcctttgctcccttttctcgccgatcctctttttagctctcgtcatggtatcttctttgaaactat |
51359775 |
T |
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| Q |
317 |
cggttcacttttatcctcacttcgatccgctgatcgtgattttcttcgacat |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51359774 |
cggttcacttttatcctcacttcgatccgctgatcgtgatttttatcgacat |
51359723 |
T |
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