View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_low_19 (Length: 341)
Name: NF1422_low_19
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 23 - 334
Target Start/End: Complemental strand, 8964238 - 8963927
Alignment:
| Q |
23 |
ggaacaaacttataacatttcattagaaatcaaggtataactatatgacggtgcatcaataaacaagtgggagctagcataaaatgacgatatcttattc |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8964238 |
ggaacaaacttataacatttcattagaaatcaaggtataactacatgatggtgcatcaataaacaagtgggagctagcataaaatgacgatattttattc |
8964139 |
T |
|
| Q |
123 |
aagtctgagtgacccagtgacttaccatcgattaaactcgacattagagttttgaatattaacattaaacaattgttcacaaacattcataatactacca |
222 |
Q |
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||||||||| |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8964138 |
aagtctgagcgacctagtgacttgccttcgattaaactcgacattagagttttgaatattaacattaaacaattgttcacaaacattcataatactacca |
8964039 |
T |
|
| Q |
223 |
aatccagtaatatctctggtcctttcacaaaaataatctacaatctttttcgagttgagagtgaaatctatattatctagtttaaggtcatccacccaga |
322 |
Q |
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||| || |||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8964038 |
aattcaataatatctctagtcctttcacgaaaataatctataatctttttcgagttgagagtgaaatctatattatctagtttaaggtcatccacccaga |
8963939 |
T |
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| Q |
323 |
tcagagtattat |
334 |
Q |
| |
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|||||| ||||| |
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| T |
8963938 |
tcagagcattat |
8963927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 27 - 317
Target Start/End: Complemental strand, 8995058 - 8994770
Alignment:
| Q |
27 |
caaacttataacatttcattagaaatcaaggtataactatatgacggtgcatcaataaacaagtgggagctagcataaaatgacgatatcttattcaagt |
126 |
Q |
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|||||| |||||||||||||||||||||||||| || || |||| ||| ||||||||||||||||| |||||||||||||||| |||| ||| ||| |
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| T |
8995058 |
caaactaataacatttcattagaaatcaaggtacaaatacatgatggtacatcaataaacaagtggaagctagcataaaatgatgataccttcgctaaga |
8994959 |
T |
|
| Q |
127 |
ctgagtgacccagtgacttaccatcgattaaactcgacattagagttttgaatattaacattaaacaattgttcacaaacattcataatactaccaaatc |
226 |
Q |
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|| || ||||| |||||| || || ||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
8994958 |
ct-agcaacccactgacttgcctccgtttaaattcgacatgagagttttgaatattaacattaaacaacaattcacaaacattcataatactacc-aatt |
8994861 |
T |
|
| Q |
227 |
cagtaatatctctggtcctttcacaaaaataatctacaatctttttcgagttgagagtgaaatctatattatctagtttaaggtcatccac |
317 |
Q |
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|| | || ||| || | | ||||| ||||||||||||||||||||| |||| ||||| |||||| |||||||| |||| ||||||| |||| |
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| T |
8994860 |
caatgatgtctttgcttccttcacgaaaataatctacaatcttttttgagtcgagagagaaatccatattatccagttgaaggtcaaccac |
8994770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 27 - 317
Target Start/End: Complemental strand, 9019505 - 9019217
Alignment:
| Q |
27 |
caaacttataacatttcattagaaatcaaggtataactatatgacggtgcatcaataaacaagtgggagctagcataaaatgacgatatcttattcaagt |
126 |
Q |
| |
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|||||| |||||||||||||||||||||||||| || || |||| ||| ||||||||||||||||| |||||||||||||||| |||| ||| ||| |
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| T |
9019505 |
caaactaataacatttcattagaaatcaaggtacaaatacatgatggtacatcaataaacaagtggaagctagcataaaatgatgataccttcgctaaga |
9019406 |
T |
|
| Q |
127 |
ctgagtgacccagtgacttaccatcgattaaactcgacattagagttttgaatattaacattaaacaattgttcacaaacattcataatactaccaaatc |
226 |
Q |
| |
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|| || ||||| |||||| || || ||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
9019405 |
ct-agcaacccactgacttgcctccgtttaaattcgacatgagagttttgaatattaacattaaacaacaattcacaaacattcataatactacc-aatt |
9019308 |
T |
|
| Q |
227 |
cagtaatatctctggtcctttcacaaaaataatctacaatctttttcgagttgagagtgaaatctatattatctagtttaaggtcatccac |
317 |
Q |
| |
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|| | || ||| || | | ||||| ||||||||||||||||||||| |||| ||||| |||||| |||||||| |||| ||||||| |||| |
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| T |
9019307 |
caatgatgtctttgcttccttcacgaaaataatctacaatcttttttgagtcgagagagaaatccatattatccagttgaaggtcaaccac |
9019217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 154 - 334
Target Start/End: Complemental strand, 8991389 - 8991209
Alignment:
| Q |
154 |
ttaaactcgacattagagttttgaatattaacattaaacaattgttcacaaacattcataatactaccaaatccagtaatatctctggtcctttcacaaa |
253 |
Q |
| |
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||||||||||||| | ||||||||| | ||||||| || || | |||||||||||||||||| ||||||||| ||||||| |||||| || |||| || |
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| T |
8991389 |
ttaaactcgacatgatagttttgaaaactaacattcaataactattcacaaacattcataatgctaccaaattcagtaatgtctctgctctcttcaagaa |
8991290 |
T |
|
| Q |
254 |
aataatctacaatctttttcgagttgagagtgaaatctatattatctagtttaaggtcatccacccagatcagagtattat |
334 |
Q |
| |
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|||||||||||| |||||| ||| |||||| ||||| ||||||||||||| ||||||| | ||| ||| ||||| ||||| |
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| T |
8991289 |
aataatctacaacctttttttagtcgagagtaaaatccatattatctagttgaaggtcaactaccgagaccagagcattat |
8991209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 154 - 334
Target Start/End: Complemental strand, 9015836 - 9015656
Alignment:
| Q |
154 |
ttaaactcgacattagagttttgaatattaacattaaacaattgttcacaaacattcataatactaccaaatccagtaatatctctggtcctttcacaaa |
253 |
Q |
| |
|
||||||||||||| | ||||||||| | ||||||| || || | |||||||||||||||||| ||||||||| ||||||| |||||| || |||| || |
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| T |
9015836 |
ttaaactcgacatgatagttttgaaaactaacattcaataactattcacaaacattcataatgctaccaaattcagtaatgtctctgctctcttcaagaa |
9015737 |
T |
|
| Q |
254 |
aataatctacaatctttttcgagttgagagtgaaatctatattatctagtttaaggtcatccacccagatcagagtattat |
334 |
Q |
| |
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|||||||||||| |||||| ||| |||||| ||||| ||||||||||||| ||||||| | ||| ||| ||||| ||||| |
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| T |
9015736 |
aataatctacaacctttttttagtcgagagtaaaatccatattatctagttgaaggtcaactaccgagaccagagcattat |
9015656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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