View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_low_2 (Length: 588)
Name: NF1422_low_2
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 18 - 584
Target Start/End: Original strand, 43410651 - 43411247
Alignment:
| Q |
18 |
ctttcagagtgaaggcaactttcgcggatgaaaaaatcaggtttagcttgcaagcaatgtggggatttagagatttgcagcttgagattgcaaggcgatt |
117 |
Q |
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| T |
43410651 |
ctttcagagtgaaggcaactttcgcggatgaaaaaatcaggtttagcttgcaagcaatgtggggatttagagatttgcagcttgagattgcaaggcgatt |
43410750 |
T |
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| Q |
118 |
taacctaacagatatgaacaacttggttctaaaatatttggatgatgaaggagaatgggttgtgttatcatgtgatgctgatcttgaagaatgtaaagac |
217 |
Q |
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| T |
43410751 |
taacctaacagatatgaacaacttggttctaaaatatttggatgatgaaggagaatgggttgtgttatcatgtgatgctgatcttgaagaatgtaaagac |
43410850 |
T |
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| Q |
218 |
ttgcacacatcatctcacacacgtaccattagactctctctttttcaagcttcccctctcaatcttccaaacactttccgcaacagcagcagcagcagtc |
317 |
Q |
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| T |
43410851 |
ttgcacacatcatctcacacacgtaccattagactctctctttttcaagcttcccctctcaatcttccaaacactttccgcaacagcagcagcagcagtc |
43410950 |
T |
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| Q |
318 |
catcctc----ctagctagcttacaacttc---tcatctgaatgtgttg------------tgtctgtctgtatattgtatagcatccaaattcccaagc |
398 |
Q |
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| T |
43410951 |
catcctcctagctagctagcttacaacttctgatcatctgaatgtgttgtgtctgtctgtctgtctgtctgtatattgtatagcatccaaattcccaagc |
43411050 |
T |
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| Q |
399 |
aaacataacatcaatgttagctcatatacctttactgcttttcatttaattactcgttaagttagattctgcggctttattttgttaattacacatcata |
498 |
Q |
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| T |
43411051 |
aaacataacatcaatgttagctcatatacctttactgcttttcatttaattactcgttaagttagattctgcggctttattttgttaattacacatcttg |
43411150 |
T |
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| Q |
499 |
ttgtttaattagagttttagttaacaaagcatcataccaaa-----------catgtagtcttcgtgattacataaactattttgttcatctcactc |
584 |
Q |
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| T |
43411151 |
ttgtttaattagagttttagttaacaaagcatcataccaaactgttacttctcatgtagtctttgtgattacataaactattttgttcatctcactc |
43411247 |
T |
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