View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_low_26 (Length: 295)
Name: NF1422_low_26
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 31613371 - 31613104
Alignment:
| Q |
9 |
gcaatgatccacccaaaacgacaacaactggggccaatattgcacccatttgtgctgcttgtgtagcacacccaagtgcagcattcctaacaaccgttgg |
108 |
Q |
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| T |
31613371 |
gcaatgatccacctaaaacgacaacaactggtgccaatattgcacccatttgtgctgcttgtgtagcacacccaagtgcagcattcctaacaaccgttgg |
31613272 |
T |
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| Q |
109 |
gaacaactccgctgtataaataaagagcaaattataagtccctgccatcccaaatattcccaaaattccacacaccattttcattcctttccacaccccc |
208 |
Q |
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| T |
31613271 |
gaacaactccgccgtataaataaagagcaaattataagtccctgccatcccaaatattcccaaaattccacacaccattttcattcctttccacaccccc |
31613172 |
T |
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| Q |
209 |
ttatttctcatcaaactccccacaaaacnnnnnnntccactgaaccataatgtccctattgttaatgg |
276 |
Q |
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| T |
31613171 |
ttatttctcatcaaactccccacaaaacaaaagaatccactgaaccataatgtccctattgttaatgg |
31613104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 89 - 276
Target Start/End: Original strand, 34430578 - 34430765
Alignment:
| Q |
89 |
gcattcctaacaaccgttgggaacaactccgctgtataaataaagagcaaattataagtccctgccatcccaaatattcccaaaattccacacaccattt |
188 |
Q |
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| T |
34430578 |
gcattcctcaccaccgtaggaaataactccgtcgtgtaaatatacaacaaattataagtcccagccattccaaatatccccaaaactccacaaaccattt |
34430677 |
T |
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| Q |
189 |
tcattcctttccacacccccttatttctcatcaaactccccacaaaacnnnnnnntccactgaaccataatgtccctattgttaatgg |
276 |
Q |
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| T |
34430678 |
taattactttccacacccctacattactcatcaaactccccatcaaacaaaagaatccactaaaccacattgtccctattgtcaatgg |
34430765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 280
Target Start/End: Original strand, 34418263 - 34418520
Alignment:
| Q |
23 |
aaaacgacaacaactggggccaatattgcacccatttgtgctgcttgtgtagcacacccaagtgcagcattcctaacaaccgttgggaacaactccgctg |
122 |
Q |
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|||||||| |||| || ||||| || || |||||||| || |||||||| |||| ||| || || || ||||| || ||||| || |||||||| | || |
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| T |
34418263 |
aaaacgaccacaaaaggcgccaaaatcgcccccatttgcgcggcttgtgtcgcactccctagcgctgcgttcctcaccaccgtaggaaacaactctgatg |
34418362 |
T |
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| Q |
123 |
tataaataaagagcaaattataagtccctgccatcccaaatattcccaaaattccacacaccattttcattcctttccacacccccttatttctcatcaa |
222 |
Q |
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| T |
34418363 |
tgtaaataaacaacaagttataagttcccgccattccgaatatccctaaaacaccacacaccaatttaattactttccacacccctacattacccataaa |
34418462 |
T |
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| Q |
223 |
actccccacaaaacnnnnnnntccactgaaccataatgtccctattgttaatggtttc |
280 |
Q |
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|||||||| |||| |||||| ||||| | |||||||||||| ||||||||| |
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| T |
34418463 |
actccccagcaaacaaaagaatccactaaaccacattgtccctattgtcaatggtttc |
34418520 |
T |
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