View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_low_3 (Length: 534)
Name: NF1422_low_3
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 2 - 520
Target Start/End: Complemental strand, 978590 - 978072
Alignment:
| Q |
2 |
aaaatacaatggcttatgaagggccattttttatgtatgatgaagaagttctgggggaaggcatcaaacaatgtacaaacaacataataggtaaactcct |
101 |
Q |
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| T |
978590 |
aaaatacaatggcttctaaagggccattttttatgtatgatgaagaagttctgggggaagacataaaacaatgtacaaacagcataataggtaaactcct |
978491 |
T |
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| Q |
102 |
tacaactaaacagatctctaagcaagttctttacaactctctaatgggaatctggtgtaatcctaatggattcaagatcacagaacttgagaataatttg |
201 |
Q |
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| T |
978490 |
tacaactaaacagatctctaagcaagttctttacaactctctaatgggaatctggtgtaaccctaatggattcaagatcacagaacttgagaataatttg |
978391 |
T |
|
| Q |
202 |
tatcaattatcttttgaaagagagtctcacattaaaaggatacttaagggggagccatggattattagaaatgtctggctaaagttacatctatggaata |
301 |
Q |
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| T |
978390 |
tatcaattatcttttgaaagagagtctgacattaaaaggatacttaaaggggagccatggattattataaatgtctggctaaagttacatctatggaata |
978291 |
T |
|
| Q |
302 |
gaagtactaatattcaagagctagatttcatacatgtcccactttggatacaaatttggggtctaccactacattgcaaaactgtagctatgggttatca |
401 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
978290 |
gaagcactaatattcaaaagctagatttcatacatgtcccactttggatacaaatttggggtctaccactacattgcaaaactgtagctatgggttagca |
978191 |
T |
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| Q |
402 |
attgggtgctcagattggacaggtagaggaatcagcaatatatgaataccccaataatgctaagatcattaaagtcaaagtgcagttcaacatctccaat |
501 |
Q |
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| T |
978190 |
attgggtgctcagattggacaggtagaggaatcagcaatacatgaataccccaataatgctaagatcattaaagtcaaagtgcagttcaacatctctaat |
978091 |
T |
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| Q |
502 |
ccaatactagcaggaatgt |
520 |
Q |
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| T |
978090 |
ccaatactagcaagaatgt |
978072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 31 - 160
Target Start/End: Original strand, 2296095 - 2296224
Alignment:
| Q |
31 |
tttatgtatgatgaagaagttctgggggaaggcatcaaacaatgtacaaacaacataataggtaaactccttacaactaaacagatctctaagcaagttc |
130 |
Q |
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||||||||||| |||||||| ||| || ||||| |||||||| | ||||| |||| | |||||||| || || |||||||| ||| | || || |||| |
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| T |
2296095 |
tttatgtatgaagaagaagtggtggatgagggcataaaacaatgcagaaacagcatattgggtaaacttctaactactaaacaaatccccaaacaggttc |
2296194 |
T |
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| Q |
131 |
tttacaactctctaatgggaatctggtgta |
160 |
Q |
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| T |
2296195 |
tttacaactccctcatgggcatatggtgta |
2296224 |
T |
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