View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_low_34 (Length: 267)
Name: NF1422_low_34
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 8964248 - 8964486
Alignment:
| Q |
19 |
atataaaaataataaaatttcttaaaggataagg------ttactatggttgaaatccaaatgcatggttagtggtggttaatggtnnnnnnnn-caagt |
111 |
Q |
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| T |
8964248 |
atataaaaataataaaatttcttaaaggataaggacaaggttactatggttcaaatccaaatgcatggttagtggtggttaatggtaaaaaaaaacaagt |
8964347 |
T |
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| Q |
112 |
tttggaataatgtaagtactatatgagtttaatctttatgtgcaccttggaagaatacattactagtgcactttgttggaaaaaatatggtggcagattc |
211 |
Q |
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| T |
8964348 |
attggaataatgtaagtactatttgagtttaatcttgatgtgcaccttggaagaagacattactagtgcactttgttggaaaaaatatggtggcagattc |
8964447 |
T |
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| Q |
212 |
tttgaaacaagattaagaaagtttattgggcgagagatc |
250 |
Q |
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| T |
8964448 |
tttgaaacaagattaagaaagtttattgggcgagagatc |
8964486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 137 - 250
Target Start/End: Complemental strand, 8956012 - 8955899
Alignment:
| Q |
137 |
agtttaatctttatgtgcaccttggaagaatacattactagtgcactttgttggaaaaaatatggtggcagattctttgaaacaagattaagaaagttta |
236 |
Q |
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| T |
8956012 |
agttaaatcttgatgtgcaccttggaagaatacattactagtgcactttgctggaaaaaatatggtggcaaattctttgaaacaagattaagaaagttta |
8955913 |
T |
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| Q |
237 |
ttgggcgagagatc |
250 |
Q |
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| T |
8955912 |
ttgggcgagagatc |
8955899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 8995075 - 8995116
Alignment:
| Q |
19 |
atataaaaataataaaatttcttaaaggataaggttactatg |
60 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
8995075 |
atataaaaaaaataaaaattcttaaaggataaggttactatg |
8995116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 9019522 - 9019563
Alignment:
| Q |
19 |
atataaaaataataaaatttcttaaaggataaggttactatg |
60 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
9019522 |
atataaaaaaaataaaaattcttaaaggataaggttactatg |
9019563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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