View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_low_4 (Length: 497)
Name: NF1422_low_4
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 45546224 - 45546703
Alignment:
| Q |
1 |
gagaatatgggatgtactagtagtcccttgaattctatcgtaatctaattgcataaagaatgtagaaaagaacatacttggtacttcacgannnnnnngg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45546224 |
gagaatatgggatgtactagtagtcccttgaattctatcataatctaattgcataaagaatgtagaaaagaacatacttggtacttcacgatttttttgg |
45546323 |
T |
|
| Q |
101 |
tcttgaactattggtttatcctcatccaagtcaccatcatcatcaggaatatgctgagtttcagtgtcatgtccactaccatgatcaaatacattctgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45546324 |
tcttgaactattggtttatcctcatccaagtcaccatcatcatcaggaatatgctgagtttcagtgtcatgtccactaccatgatcaaatacattctgac |
45546423 |
T |
|
| Q |
201 |
catgcttcttaatactgtccctaactttcctagcctttgccttcaccctactcataacagacttcttctcaggctcaggctcaggctcagtgggctcttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
45546424 |
catgcttcttaatactgtccctaactttcctagcctttgccttcaccctactcataacagacttcttctcaggctcaggctcagaattagtgggctcttc |
45546523 |
T |
|
| Q |
301 |
tggtccatgtgtcaatgtcactgcatccaaaatagattcaaataaagtagnnnnnnntgcttcaaacttaaaaactaccaagtatagtatatattaactc |
400 |
Q |
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| T |
45546524 |
tggtccatgtgtcagtgtcacttcatccaaaatagattcaaataaagtagaaaaaaatgcttcaaacttaaaaactaccaagtatagtatatattaactc |
45546623 |
T |
|
| Q |
401 |
ttgcttcaaacaaaatgatatgatacctggatatggttcaacgttaggtgagttttgttcatcgttctccccttccacat |
480 |
Q |
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| T |
45546624 |
ttgcttcaaacaaaatgatatgatacctggatatggttcaacgttaggtgagttttgttcatcgttctccccttccacat |
45546703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 45551487 - 45551732
Alignment:
| Q |
20 |
gtagtcccttgaattctatcgtaatctaattgcataaagaatgtagaaaagaacatacttggtacttcacgannnnnnnggtcttgaactattggtttat |
119 |
Q |
| |
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|||||||||||||||||| | ||||||||||||| || |||||||||||||||||||||||| ||| | || |||||||||| | | | |||| |
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| T |
45551487 |
gtagtcccttgaattctagcataatctaattgca--aataatgtagaaaagaacatacttggtgcttgatgatcttgtgggtcttgaaccagttgcttat |
45551584 |
T |
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| Q |
120 |
cctcatccaagtcaccatcatcatcaggaatatgctgagtttcagtgtcatgtccactaccatgatcaaatacattctgaccatgcttcttaatactgtc |
219 |
Q |
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||||||||||||| |||||||| || |||||||| ||||| ||| ||||||| |||||||||||| ||| | ||||| || || ||||| |||| |
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| T |
45551585 |
cctcatccaagtcgatatcatcat---gagtatgctgaatttcattgttatgtccattaccatgatcaagtacttgttgaccgtgttttttaattgtgtc |
45551681 |
T |
|
| Q |
220 |
cctaactttcctagcctttgccttcaccctactcataacagacttcttctc |
270 |
Q |
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| ||| |||| ||||||||||||||||| || ||| |||||| |||||||| |
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| T |
45551682 |
cttaattttcttagcctttgccttcaccttattcagaacagatttcttctc |
45551732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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