View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1422_low_43 (Length: 250)

Name: NF1422_low_43
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1422_low_43
NF1422_low_43
[»] chr1 (2 HSPs)
chr1 (13-250)||(648490-648727)
chr1 (76-250)||(685955-686125)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 648490 - 648727
Alignment:
Q  13 aatatggatataaaggagagatttatattgattgtactgcttaaagatagtaatagacgatgcaatctaaacatgaaaacatgaacattttctcaaaacc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  648490 aatatggatataaaggagagatttatattgattgtactgcttaaagatagtaatagacgatgcaatctaaacatgaaaacatgaacattttctcaaaacc 648589  T
Q  113 aacaacaagtcctaaaatttcaattatgctaaaacattatattacttttctaaattacacccagtatttaaacattgctagcttttgctctgaataaatg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  648590 aacaacaagtcctaaaatttcaattatgctaaaacattatattacttttctaaattacacccagtatttaaacattgctagcttttgttctgaataaatg 648689  T
Q  213 aagatttgtcttaaacacaccagacttttaaattttaa 250  Q
    ||||||||||||||||||||||||||||||||||||||    
T  648690 aagatttgtcttaaacacaccagacttttaaattttaa 648727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 76 - 250
Target Start/End: Original strand, 685955 - 686125
Alignment:
Q  76 aatctaaacatgaaaacatgaacattttctcaaaaccaacaacaagtcctaaaatttcaattatgctaaaacattatattacttttctaaattacaccca 175  Q
    |||| |||||| |||||||||||||||||||||  |||| ||||||||||||||||||| |||||||||||||| |||  |||||| |||||||||||||    
T  685955 aatccaaacataaaaacatgaacattttctcaa--ccaaaaacaagtcctaaaatttcagttatgctaaaacataatagaacttttataaattacaccca 686052  T
Q  176 gtatttaaacattgctagcttttgctctgaataaatgaagatttgtcttaaacacaccagacttttaaattttaa 250  Q
    || || |||||||||||||||||  ||| |||||||||| |||||| || |||| |  |||||||||||||||||    
T  686053 gttttcaaacattgctagctttttttcttaataaatgaatatttgt-ttgaacaga-tagacttttaaattttaa 686125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University