View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_low_45 (Length: 249)
Name: NF1422_low_45
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 40847103 - 40847271
Alignment:
| Q |
1 |
aacactcatctatgtggtagttcttaataaccataatcttcaacctcttagataaagctttacgcatagaaaaacaattaactatatatgtattcctccg |
100 |
Q |
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| T |
40847103 |
aacactcatctatttggtagttcttaataaccataatcttcaacctcttagataaagctttacgcatagaaaaacaattaactatatatgtatttctccg |
40847202 |
T |
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| Q |
101 |
attggaagaagactttcattataaataaccatttgacaacattcatgccttcctttaacaccaaccttt |
169 |
Q |
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| T |
40847203 |
attggaagaagactttcattataaataaccatttgacaacattcatgtctttctttaacaccaaccttt |
40847271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 40842946 - 40843132
Alignment:
| Q |
18 |
tagttcttaataaccataatcttcaacctcttagataaagctttacgcatagaaaaacaattaactatatatgtattcctccgattggaagaagactttc |
117 |
Q |
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| T |
40842946 |
tagttcctaataaccataatcttcaacctcttggataaagctttaggcataggaaaacaattaaccat----gcattcctccg----gaagaaggctctc |
40843037 |
T |
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| Q |
118 |
attataaataaccatttgacaacattcatgccttcctttaacaccaaccttttcaatcatatcggtactcaaattaaacctttccacttcttcgt |
212 |
Q |
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| T |
40843038 |
attatagataaccatttgacaacattcatgtcttcctttaacaccaaccttctcaatcatgtcggtattcaaattaaacctttccacttcttcgt |
40843132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 40847265 - 40847310
Alignment:
| Q |
194 |
aacctttccacttcttcgtctatatttaaataaaatatatccctat |
239 |
Q |
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| T |
40847265 |
aacctttccacttcttcgtctatatttaaataaaatatatccctat |
40847310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 46503118 - 46503051
Alignment:
| Q |
92 |
attcctccgattggaagaagactttcattataaataaccatttgacaacattcatgccttcctttaac |
159 |
Q |
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| T |
46503118 |
attcctccaattggaagaagactttcattataaataaccatttgactacatctatgccttccattaac |
46503051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 4041078 - 4041145
Alignment:
| Q |
92 |
attcctccgattggaagaagactttcattataaataaccatttgacaacattcatgccttcctttaac |
159 |
Q |
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| T |
4041078 |
attccttcaattggaagaaggctttcattataaataaccgtctgacaacatttataccttcctttaac |
4041145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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