View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_low_47 (Length: 247)
Name: NF1422_low_47
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 42564904 - 42564678
Alignment:
| Q |
1 |
tcattttgattagagtgcttaggcccacaccattacacttttaatctttgttnnnnnnnnttattttaagtcactataaatatac----cacatttgttt |
96 |
Q |
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| T |
42564904 |
tcattttgattagagtgcttaggcccacaccattacacttttaatctttgttaaaaaaatatattttaagtcactataattatacataccacatttgttt |
42564805 |
T |
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| Q |
97 |
tattaaaaatggtccttgtaatagtcattgcaatcttgattataaagaattaaaattaaatattctacataatcaacaaggctcaaaagtaa-aaaatgt |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
42564804 |
tattaaaaatggtccttgtaatagtcattgcaatcttgattataaagaattaaaattaaattttctacataatcaacaaggctcaaaagtaaaaaaatgt |
42564705 |
T |
|
| Q |
196 |
tttatttgcacggatcaattagaataaa |
223 |
Q |
| |
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||||||| ||||||||||||||||||| |
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| T |
42564704 |
tttattt-tacggatcaattagaataaa |
42564678 |
T |
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