View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1422_low_5 (Length: 496)
Name: NF1422_low_5
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 19)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 15 - 482
Target Start/End: Original strand, 6390945 - 6391412
Alignment:
| Q |
15 |
ataggcaggatagttgttgttgttgcaaacactatcgatgtaaatcatgtacctgtgatgattaatagcggtttttcaagcaaataattatgttgagttc |
114 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6390945 |
ataggcaggatagctgttgttgttgcaaacactatcgatgtaaatcatgtacctgtgatgattaatagcggtttttcaagcaaataattatgttgagttc |
6391044 |
T |
|
| Q |
115 |
aatgtatcataatctcaaatggaaatttatcattttattgcaggcacttcctagaacattctcagacaatttgaagaagaagttgccagaaaatgtgacc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6391045 |
aatgtatcataatctcaaatggaaatttatcattttattgcaggcacttcctagaacattctcagacaatttgaagaagaagctgccagaaaatgtgacc |
6391144 |
T |
|
| Q |
215 |
cttaaaggtcctagtggagttgaatggaatgtagggctgcaaactagagataatactgtttacttcgtggacggttggcatcagtttgcaagagatcatt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6391145 |
cttaaaggtcctagtggagttgaatggaatgtagggctgcaaactagagataatactgtttacttcgtggacggttggcatcagtttgcaagagatcatt |
6391244 |
T |
|
| Q |
315 |
ctctgaaagagaatgatttcgcggtctttaagtacaatggcgaatcattgttcaatgtgttaatctttcaaggagaaagcttttgtgagaaagcggcttc |
414 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6391245 |
ctctgaaagagaatgatttcgcagtctttaagtacaatggcgaatcattgttcaatgtgttaatctttcaaggagaaagcttttgtgagaaagcggcttc |
6391344 |
T |
|
| Q |
415 |
ctattttgttggtctcagggagaaggaaacaaacaagtctgttgaagaagtcaacactgttcttaatg |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6391345 |
ctattttgttggtctcagggagaaggaaacaaacaagtctgttgaagaagtcaacactgttcttaatg |
6391412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 114 - 424
Target Start/End: Original strand, 6372230 - 6372539
Alignment:
| Q |
114 |
caatgtatcataatctcaaatggaaatttatcattttattgcaggcacttcctagaacattctcagacaatttgaagaagaagttgccagaaaatgtgac |
213 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
6372230 |
caatttatcttaatctcaaatggaaatttatacttttat-gcaggcacttcctaaaacattctcagacaacttaaagaagaagttgccagaaaatgtgac |
6372328 |
T |
|
| Q |
214 |
ccttaaaggtcctagtggagttgaatggaatgtagggctgcaaactagagataatactgtttacttcgtggacggttggcatcagtttgcaagagatcat |
313 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||| ||||||| || ||||||| |||||| ||||||||||||| | ||||| | ||||||| |
|
|
| T |
6372329 |
ccttaaaggtcctagtggagttgtatggaatatagggctgacaactagaaatgatactgtgtacttcatggacggttggcagcggtttgtgaaagatcat |
6372428 |
T |
|
| Q |
314 |
tctctgaaagagaatgatttcgcggtctttaagtacaatggcgaatcattgttcaatgtgttaatctttcaaggagaaagcttttgtgagaaagcggctt |
413 |
Q |
| |
|
||| ||||||| ||||||||| ||||||||||||||||| |||||| | || | || ||||||||| | ||||||||||| ||||||||||| |||| |
|
|
| T |
6372429 |
tctttgaaagaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaatggagaaagcttatgtgagaaagcagctt |
6372528 |
T |
|
| Q |
414 |
cctattttgtt |
424 |
Q |
| |
|
| ||||||||| |
|
|
| T |
6372529 |
cttattttgtt |
6372539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 137 - 423
Target Start/End: Original strand, 6399329 - 6399615
Alignment:
| Q |
137 |
aaatttatcattttattgcaggcacttcctagaacattctcagacaatttgaagaagaagttgccagaaaatgtgacccttaaaggtcctagtggagttg |
236 |
Q |
| |
|
|||||||| ||| ||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6399329 |
aaatttatattttaattgcaggcacttcctaaaacattttcagacaatttaaagaagaagttgccagaaaatgtgactcttaaaggtcctagtggagttg |
6399428 |
T |
|
| Q |
237 |
aatggaatgtagggctgcaaactagagataatactgtttacttcgtggacggttggcatcagtttgcaagagatcattctctgaaagagaatgatttcgc |
336 |
Q |
| |
|
|||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| || || | | ||||| ||| ||||||||||||||||| |
|
|
| T |
6399429 |
tgtggaatataggactgacaactagagataatactgtttacttcgtggacggttggcaacaattcgtgaacgatcactctttgaaagagaatgatttcct |
6399528 |
T |
|
| Q |
337 |
ggtctttaagtacaatggcgaatcattgttcaatgtgttaatctttcaaggagaaagcttttgtgagaaagcggcttcctattttgt |
423 |
Q |
| |
|
||||||||||||||||| |||||| | || | || ||||||||| | ||| | || ||||||||||| || |||| |||||||| |
|
|
| T |
6399529 |
tgtctttaagtacaatggtgaatcactctttgaggttttaatctttgatggaaatagtttttgtgagaaggcaacttcttattttgt |
6399615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 112 - 426
Target Start/End: Original strand, 6404027 - 6404341
Alignment:
| Q |
112 |
ttcaatgtatcataatctcaaatggaaatttatcattttattgcaggcacttcctagaacattctcagacaatttgaagaagaagttgccagaaaatgtg |
211 |
Q |
| |
|
||||||||||| |||| ||||| |||||||||| ||| ||||||||||||||||| |||||| ||||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
6404027 |
ttcaatgtatcttaatatcaaaaggaaatttatgttttaattgcaggcacttcctaaaacattttcagacaatttaaagaacaagttgcctgaaaatgtg |
6404126 |
T |
|
| Q |
212 |
acccttaaaggtcctagtggagttgaatggaatgtagggctgcaaactagagataatactgtttacttcgtggacggttggcatcagtttgcaagagatc |
311 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| ||| |||||||||| |||| ||||||||| |||||||||||| | |||| | ||||| |
|
|
| T |
6404127 |
acccttaaaggtcctagtggagttgtttggaatataggactgacaactagagattatacggtttacttcacggacggttggcaacgatttgtgaaagatc |
6404226 |
T |
|
| Q |
312 |
attctctgaaagagaatgatttcgcggtctttaagtacaatggcgaatcattgttcaatgtgttaatctttcaaggagaaagcttttgtgagaaagcggc |
411 |
Q |
| |
|
||||| ||||||||||||||||| || |||||||||||||| |||||| | || | || ||||||||| | |||| | |||||||||||| || | |
|
|
| T |
6404227 |
attctttgaaagagaatgatttccttgtttttaagtacaatggtgaatcactctttgaggttttaatctttgatcgagataacttttgtgagaaggcaac |
6404326 |
T |
|
| Q |
412 |
ttcctattttgttgg |
426 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
6404327 |
ttcttattttgttgg |
6404341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 121 - 421
Target Start/End: Original strand, 6379078 - 6379378
Alignment:
| Q |
121 |
tcataatctcaaatggaaatttatcattttattgcaggcacttcctagaacattctcagacaatttgaagaagaagttgccagaaaatgtgacccttaaa |
220 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||| ||||| |||||||||| |||||||||||||||| |
|
|
| T |
6379078 |
tcatagtctcaaatggaaatttatacttttattgcaggcacttcctaaaacattttcagacaatttaaagaacaagttgccagcaaatgtgacccttaaa |
6379177 |
T |
|
| Q |
221 |
ggtcctagtggagttgaatggaatgtagggctgcaaactagagataatactgtttacttcgtggacggttggcatcagtttgcaagagatcattctctga |
320 |
Q |
| |
|
|||||||||||||||| ||| || |||||||| |||||||||| |||| |||||| | ||| |||||||| || || | | |||||| ||| ||| |
|
|
| T |
6379178 |
ggtcctagtggagttgtgtgggatatagggctgacaactagagatgatacaatttactccacggatggttggcaacaattcgtgaaagatcactctttga |
6379277 |
T |
|
| Q |
321 |
aagagaatgatttcgcggtctttaagtacaatggcgaatcattgttcaatgtgttaatctttcaaggagaaagcttttgtgagaaagcggcttcctattt |
420 |
Q |
| |
|
|| ||||||||||| ||||| ||||||||||| |||||| |||| | || ||||||||||| ||||||||||| || |||||||| ||||| ||||| |
|
|
| T |
6379278 |
aacagaatgatttccttgtcttcaagtacaatggtgaatcactgtttgaggttttaatctttcatggagaaagcttctgcgagaaagcagcttcttattt |
6379377 |
T |
|
| Q |
421 |
t |
421 |
Q |
| |
|
| |
|
|
| T |
6379378 |
t |
6379378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 113 - 424
Target Start/End: Original strand, 6366678 - 6366989
Alignment:
| Q |
113 |
tcaatgtatcataatctcaaatggaaatttatcattttattgcaggcacttcctagaacattctcagacaatttgaagaagaagttgccagaaaatgtga |
212 |
Q |
| |
|
|||||||||| || |||||| ||||||||||| | |||||||||||| ||||||| || |||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
6366678 |
tcaatgtatcttagtctcaactggaaatttataaatttattgcaggcccttcctaaaatattctcggacaatttaaagaagaagttgccagaaaatgtga |
6366777 |
T |
|
| Q |
213 |
cccttaaaggtcctagtggagttgaatggaatgtagggctgcaaactagagataatactgtttacttcgtggacggttggcatcagtttgcaagagatca |
312 |
Q |
| |
|
| |||||||||||||||||||||| |||||| |||||||| | ||||||| | | ||||||| |||||||||||||||| | || | | |||||| |
|
|
| T |
6366778 |
cacttaaaggtcctagtggagttgtgtggaatatagggctgaatactagaggtgaatctgtttatttcgtggacggttggcgacgtttcgtgaaagatca |
6366877 |
T |
|
| Q |
313 |
ttctctgaaagagaatgatttcgcggtctttaagtacaatggcgaatcattgttcaatgtgttaatctttcaaggagaaagcttttgtgagaaagcggct |
412 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||| || |||||| | || | || ||||||||| | ||||||||||| ||||| ||||| ||| |
|
|
| T |
6366878 |
ctctttgaaagagaatgatttccttgtctttaagtacaacggtgaatcactctttgaggttttaatctttaatggagaaagcttctgtgaaaaagcagct |
6366977 |
T |
|
| Q |
413 |
tcctattttgtt |
424 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
6366978 |
tcttattttgtt |
6366989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 124 - 426
Target Start/End: Original strand, 6380298 - 6380600
Alignment:
| Q |
124 |
taatctcaaatggaaatttatcattttattgcaggcacttcctagaacattctcagacaatttgaagaagaagttgccagaaaatgtgacccttaaaggt |
223 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6380298 |
taatctcagatggaaatttatattttaattgcaggcacttcctaaaacattctcagacaatttaaagaagaagttgccagaaaatgtgacccttaaaggt |
6380397 |
T |
|
| Q |
224 |
cctagtggagttgaatggaatgtagggctgcaaactagagataatactgtttacttcgtggacggttggcatcagtttgcaagagatcattctctgaaag |
323 |
Q |
| |
|
||||||||||||| |||||| |||||||| |||||||||| ||| ||||||||| |||||||||||| | | || | |||||| ||| ||||| |
|
|
| T |
6380398 |
cctagtggagttgtgtggaatatagggctgacaactagagatgatattgtttactttgtggacggttggaaacgattcattaaagatcactctttgaaac |
6380497 |
T |
|
| Q |
324 |
agaatgatttcgcggtctttaagtacaatggcgaatcattgttcaatgtgttaatctttcaaggagaaagcttttgtgagaaagcggcttcctattttgt |
423 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||| | || | || ||||||||| | ||||| || || |||||||| || ||||| |||||||| |
|
|
| T |
6380498 |
agaatgatttccttgtctttaagtacaacggtaaatcactctttgaggttttaatctttgatggagatagtttctgtgagaaggcagcttcttattttgt |
6380597 |
T |
|
| Q |
424 |
tgg |
426 |
Q |
| |
|
||| |
|
|
| T |
6380598 |
tgg |
6380600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 124 - 423
Target Start/End: Original strand, 6420486 - 6420785
Alignment:
| Q |
124 |
taatctcaaatggaaatttatcattttattgcaggcacttcctagaacattctcagacaatttgaagaagaagttgccagaaaatgtgacccttaaaggt |
223 |
Q |
| |
|
|||||||| |||||||||||| ||| | ||||||||||||||| |||||| ||||||||||| || ||||||||||||||||||||||||||||| ||| |
|
|
| T |
6420486 |
taatctcagatggaaatttatattttaactgcaggcacttcctaaaacattttcagacaatttaaaaaagaagttgccagaaaatgtgacccttaagggt |
6420585 |
T |
|
| Q |
224 |
cctagtggagttgaatggaatgtagggctgcaaactagagataatactgtttacttcgtggacggttggcatcagtttgcaagagatcattctctgaaag |
323 |
Q |
| |
|
|||||||||| || ||| || | ||| || ||||||||||||||||||||||||||||| ||||||| | | || | | |||||||||| |||||| |
|
|
| T |
6420586 |
cctagtggagctgtgtgggatattgggttgacaactagagataatactgtttacttcgtgggcggttgggagcgattcgtgaaagatcattctttgaaag |
6420685 |
T |
|
| Q |
324 |
agaatgatttcgcggtctttaagtacaatggcgaatcattgttcaatgtgttaatctttcaaggagaaagcttttgtgagaaagcggcttcctattttgt |
423 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||| | || | || ||||||||| | ||||| | |||||||||||| || |||| |||||||| |
|
|
| T |
6420686 |
agaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttgatggagataacttttgtgagaaggcaacttcttattttgt |
6420785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 134 - 423
Target Start/End: Original strand, 6348754 - 6349043
Alignment:
| Q |
134 |
tggaaatttatcattttattgcaggcacttcctagaacattctcagacaatttgaagaagaagttgccagaaaatgtgacccttaaaggtcctagtggag |
233 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6348754 |
tggaaatttatacttttattgcaggcacttcctaaaacattttcagacaatttaaataagaagttgccagaaaatgtgacccttaaaggtcctagtggag |
6348853 |
T |
|
| Q |
234 |
ttgaatggaatgtagggctgcaaactagagataatactgtttacttcgtggacggttggcatcagtttgcaagagatcattctctgaaagagaatgattt |
333 |
Q |
| |
|
|| ||||||| || ||||| |||||||||| |||||||||||||||||||||||| || || | ||||| || |||||| |||||||| |
|
|
| T |
6348854 |
ttacatggaatataaggctgacaactagagatggctttgtttacttcgtggacggttggcaacaattcatgaacgatcactcgttgaaagctaatgattt |
6348953 |
T |
|
| Q |
334 |
cgcggtctttaagtacaatggcgaatcattgttcaatgtgttaatctttcaaggagaaagcttttgtgagaaagcggcttcctattttgt |
423 |
Q |
| |
|
| |||| |||||||||||| |||||| ||| | || ||||||||| | ||||||||||| |||||||||| ||||| |||||||| |
|
|
| T |
6348954 |
ccttgtctgtaagtacaatggtgaatcacacttcgaggttttaatctttgatggagaaagcttctgtgagaaagaagcttcttattttgt |
6349043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 124 - 423
Target Start/End: Original strand, 6358786 - 6359085
Alignment:
| Q |
124 |
taatctcaaatggaaatttatcattttattgcaggcacttcctagaacattctcagacaatttgaagaagaagttgccagaaaatgtgacccttaaaggt |
223 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||| |||||| ||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
6358786 |
taatctcaaattgaaatttatacttttattgcaggcacttcctaaaacattttcagacaatttaaataagaagttgccagaaaatgtgacccttaaaggt |
6358885 |
T |
|
| Q |
224 |
cctagtggagttgaatggaatgtagggctgcaaactagagataatactgtttacttcgtggacggttggcatcagtttgcaagagatcattctctgaaag |
323 |
Q |
| |
|
|| |||| |||| |||||| ||||||| ||||||||| |||||||||||||| || |||||||||| | || | | ||||| ||| |||||| |
|
|
| T |
6358886 |
cccggtggtgttgcatggaaaatagggctcataactagagacgatactgtttacttcctgaacggttggcaacgattcgtgaacgatcactctttgaaag |
6358985 |
T |
|
| Q |
324 |
agaatgatttcgcggtctttaagtacaatggcgaatcattgttcaatgtgttaatctttcaaggagaaagcttttgtgagaaagcggcttcctattttgt |
423 |
Q |
| |
|
| ||||||||| |||||||| |||||||| || ||| || |||| || |||||| | ||||||||||| |||||||||| ||||| |||||||| |
|
|
| T |
6358986 |
ataatgatttccttgtctttaattacaatggtgagtcacactttgatgttttgatctttgatggagaaagcttctgtgagaaagaagcttcttattttgt |
6359085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 124 - 426
Target Start/End: Original strand, 6415329 - 6415631
Alignment:
| Q |
124 |
taatctcaaatggaaatttatcattttattgcaggcacttcctagaacattctcagacaatttgaagaagaagttgccagaaaatgtgacccttaaaggt |
223 |
Q |
| |
|
|||||||| |||||||||| | ||| ||||||||||||||||| |||||| |||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6415329 |
taatctcagatggaaatttgtattttaattgcaggcacttcctaaaacattttcagacaacttaaagaagaagttgccagaaaatgtgacccttaaaggt |
6415428 |
T |
|
| Q |
224 |
cctagtggagttgaatggaatgtagggctgcaaactagagataatactgtttacttcgtggacggttggcatcagtttgcaagagatcattctctgaaag |
323 |
Q |
| |
|
||||||||||||| |||||| |||||||| ||||| |||| | |||||||||||| |||||||||| || |||| | ||||| ||| |||||| |
|
|
| T |
6415429 |
cctagtggagttgtgtggaatatagggctgacaactatagatgacactgtttacttcacaaacggttggcaacaatttgtgaatgatcactctttgaaag |
6415528 |
T |
|
| Q |
324 |
agaatgatttcgcggtctttaagtacaatggcgaatcattgttcaatgtgttaatctttcaaggagaaagcttttgtgagaaagcggcttcctattttgt |
423 |
Q |
| |
|
||| ||||||| |||| ||||||||||| ||||| ||||| | || ||||||||| | ||| || || |||||||| || ||||| |||||||| |
|
|
| T |
6415529 |
agagtgatttccttttcttcaagtacaatggtgaatcgttgtttgaagttttaatctttgatggacgtagtttctgtgagaaggcagcttcttattttgt |
6415628 |
T |
|
| Q |
424 |
tgg |
426 |
Q |
| |
|
||| |
|
|
| T |
6415629 |
tgg |
6415631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 113 - 426
Target Start/End: Original strand, 6357401 - 6357714
Alignment:
| Q |
113 |
tcaatgtatcataatctcaaatggaaatttatcattttattgcaggcacttcctagaacattctcagacaatttgaagaagaagttgccagaaaatgtga |
212 |
Q |
| |
|
||||||| || || |||||| ||||||| ||| | |||||||||||| ||||| | |||||| ||||||||||| |||||||||||||||| || |||| |
|
|
| T |
6357401 |
tcaatgtttcttagtctcaactggaaatctataaatttattgcaggcccttccgaaaacattttcagacaatttaaagaagaagttgccaggcaacgtga |
6357500 |
T |
|
| Q |
213 |
cccttaaaggtcctagtggagttgaatggaatgtagggctgcaaactagagataatactgtttacttcgtggacggttggcatcagtttgcaagagatca |
312 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| | |||||||| |||| |||||||| | | || ||||| || | | |||||| |
|
|
| T |
6357501 |
cccttaaaggtcctagtggagttgtgtggaatgttgggctgacagctagagatgataccatttacttcacgaatggatggcaaagattcgtgaaagatca |
6357600 |
T |
|
| Q |
313 |
ttctctgaaagagaatgatttcgcggtctttaagtacaatggcgaatcattgttcaatgtgttaatctttcaaggagaaagcttttgtgagaaagcggct |
412 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||| || ||| | || | || ||||||||||| ||||| || || |||||||| || ||| |
|
|
| T |
6357601 |
ctctttgaaagagaatgatttccttgtctttaagtacaatggggagtcactctttgaagttttaatctttcatggagatagtttctgtgagaaggcagct |
6357700 |
T |
|
| Q |
413 |
tcctattttgttgg |
426 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
6357701 |
tcttattttgttgg |
6357714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 152 - 280
Target Start/End: Original strand, 6427852 - 6427980
Alignment:
| Q |
152 |
ttgcaggcacttcctagaacattctcagacaatttgaagaagaagttgccagaaaatgtgacccttaaaggtcctagtggagttgaatggaatgtagggc |
251 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||| || ||||||||||| |||||||||| ||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
6427852 |
ttgcaggcacttcctaaaacattttcagacaatttaaaaaagaagttgcctgaaaatgtgaaccttaaaggtcctagtggagttgtgtggaatatagggc |
6427951 |
T |
|
| Q |
252 |
tgcaaactagagataatactgtttacttc |
280 |
Q |
| |
|
|| ||||| ||| | |||||||||||| |
|
|
| T |
6427952 |
tgacaactaaagaggacactgtttacttc |
6427980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 131 - 280
Target Start/End: Original strand, 6347660 - 6347809
Alignment:
| Q |
131 |
aaatggaaatttatcattttattgcaggcacttcctagaacattctcagacaatttgaagaagaagttgccagaaaatgtgacccttaaaggtcctagtg |
230 |
Q |
| |
|
||||||| |||||| |||| |||||||||||||| | |||||| ||||||||||| ||||||||||| ||||||||||||||| ||||| ||||||| | |
|
|
| T |
6347660 |
aaatggacatttatacttttgttgcaggcacttccgaaaacattttcagacaatttaaagaagaagttaccagaaaatgtgaccattaaatgtcctagcg |
6347759 |
T |
|
| Q |
231 |
gagttgaatggaatgtagggctgcaaactagagataatactgtttacttc |
280 |
Q |
| |
|
|| ||| |||||| |||||||| | |||||| | |||||||||||||| |
|
|
| T |
6347760 |
gaattgtgtggaatatagggctgacagctagaggtgatactgtttacttc |
6347809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 6348608 - 6348677
Alignment:
| Q |
39 |
gcaaacactatcgatgtaaatcatgtacctgtgatgattaatagcggtttttcaagcaaataattatgtt |
108 |
Q |
| |
|
|||||||||||| ||||||||||||||| || |||||||||| || |||| ||||||||||||||||||| |
|
|
| T |
6348608 |
gcaaacactatctatgtaaatcatgtacttgagatgattaatggctgtttctcaagcaaataattatgtt |
6348677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 6380090 - 6380152
Alignment:
| Q |
38 |
tgcaaacactatcgatgtaaatcatgtacctgtgatgattaatagcggtttttcaagcaaata |
100 |
Q |
| |
|
||||| |||||| ||||||||||||||| | ||||||||||||| |||||||||||||||| |
|
|
| T |
6380090 |
tgcaaccactatttatgtaaatcatgtactggagatgattaatagctgtttttcaagcaaata |
6380152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 6415209 - 6415263
Alignment:
| Q |
52 |
atgtaaatcatgtacctgtgatgattaatagcggtttttcaagcaaataattatg |
106 |
Q |
| |
|
||||||||||||||| | ||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
6415209 |
atgtaaatcatgtacattagatgattaatagctgtttttcaagcaaattattatg |
6415263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 6420367 - 6420421
Alignment:
| Q |
52 |
atgtaaatcatgtacctgtgatgattaatagcggtttttcaagcaaataattatg |
106 |
Q |
| |
|
|||| |||||||||| || ||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
6420367 |
atgtgaatcatgtacttgagatgattaatagctgtttttcaagcaaattattatg |
6420421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 6399227 - 6399277
Alignment:
| Q |
52 |
atgtaaatcatgtacctgtgatgattaatagcggtttttcaagcaaataat |
102 |
Q |
| |
|
||||||| ||||||| | ||||||||||||| |||||||||||||||||| |
|
|
| T |
6399227 |
atgtaaaccatgtactagagatgattaatagctgtttttcaagcaaataat |
6399277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University