View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_low_50 (Length: 238)
Name: NF1422_low_50
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 39685000 - 39685220
Alignment:
| Q |
1 |
attcatgttactaactacaaccataaagatgcaaaaaagaacgcaactaaagcataaaatattggatctagaacactgaactcaattttatagataaccc |
100 |
Q |
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| T |
39685000 |
attcatgttactaactacaaccataaagatgcaaaaaagaacgcaactaaagcataaaatattggatctagaacactgaactcaattttaaagataaccc |
39685099 |
T |
|
| Q |
101 |
ccacggnnnnnnn-gtatcttactgtaagagtgactgaatcaaatataatggcgtttccaacaacctttcataaattatgcaaatgttttaatttctaat |
199 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39685100 |
ccacggaaaaaaaagtatcttactgtaagagtgactgaatcaaatataatggcgtttccaacaacctttcataaattatgcaaatgttttaatttctaat |
39685199 |
T |
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| Q |
200 |
gtgcatgtggtatatatagca |
220 |
Q |
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||||||||||||||||||||| |
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| T |
39685200 |
gtgcatgtggtatatatagca |
39685220 |
T |
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