View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_low_52 (Length: 236)
Name: NF1422_low_52
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 40847028 - 40846808
Alignment:
| Q |
1 |
tcaagtaattgtctcatgtttgagaaacttt-atagatgattttaaaagtgaaaaatcactgcttgaacttaattgaagtatattttatttttgaaaatg |
99 |
Q |
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| T |
40847028 |
tcaagtaattgtctcatgtttgagaaacttttatagatgattttaaaagtgaaaaatcactgcttgaacttaattgaagtatattttatttttgaaaatg |
40846929 |
T |
|
| Q |
100 |
aagcatatactccataccatgtttttgttcaatacatttgttaagcttaactcttttgtttgtgtttcaaatgaattagttatagctgtcaaacatgtaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40846928 |
aagcatatactccataccatgtttttgttcaatacatttgttaagcttaactcttttgtttgtgtttcaaatgaattagttatagctgtcaaacatgtaa |
40846829 |
T |
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| Q |
200 |
atagtttcttgaagtcctttt |
220 |
Q |
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||||||||||||||||||||| |
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| T |
40846828 |
atagtttcttgaagtcctttt |
40846808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 40842852 - 40842733
Alignment:
| Q |
1 |
tcaagtaattgtctcatgtttgagaaactttatagatgattttaaaagtgaaaaatcactgcttgaacttaattgaagtatattttatttttgaaaatga |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| | ||||||||||| ||||||| || |
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| T |
40842852 |
tcaagtaattgtctcatgtttgagaaacttta--gatgattataaaagtgaaaaatcactgcttgaacttaatt-atatatattttattcttgaaaacga |
40842756 |
T |
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| Q |
101 |
agcatatactccataccatgttt |
123 |
Q |
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|||||||||| | |||||||||| |
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| T |
40842755 |
agcatatacttcgtaccatgttt |
40842733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 45401278 - 45401352
Alignment:
| Q |
132 |
tacatttgttaagcttaactcttttgtttgtgtttcaaatgaattagttatagctgtcaaacatgtaaatagttt |
206 |
Q |
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||||||| |||||||||||| || ||| ||||||||| ||||||||||||| | |||||||||| |||||||||| |
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| T |
45401278 |
tacattttttaagcttaacttttctgtgtgtgtttcatatgaattagttattgttgtcaaacatataaatagttt |
45401352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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