View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1422_low_59 (Length: 219)

Name: NF1422_low_59
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1422_low_59
NF1422_low_59
[»] chr1 (8 HSPs)
chr1 (117-174)||(4532086-4532143)
chr1 (117-173)||(33766400-33766456)
chr1 (117-174)||(34549407-34549464)
chr1 (117-174)||(45432373-45432430)
chr1 (117-173)||(51534478-51534534)
chr1 (117-174)||(19227886-19227943)
chr1 (117-165)||(33936477-33936525)
chr1 (15-43)||(4532217-4532245)
[»] chr7 (5 HSPs)
chr7 (118-173)||(9942602-9942657)
chr7 (117-174)||(28782014-28782071)
chr7 (119-174)||(9948976-9949031)
chr7 (117-174)||(11621408-11621465)
chr7 (117-174)||(40871301-40871358)
[»] chr6 (4 HSPs)
chr6 (118-174)||(12912247-12912303)
chr6 (118-172)||(165556-165610)
chr6 (117-165)||(18972622-18972670)
chr6 (117-165)||(24393954-24394002)
[»] chr8 (3 HSPs)
chr8 (121-174)||(13089765-13089818)
chr8 (117-173)||(45547944-45548000)
chr8 (117-174)||(4034300-4034357)
[»] chr5 (4 HSPs)
chr5 (117-174)||(22639603-22639660)
chr5 (117-173)||(39143220-39143276)
chr5 (117-165)||(926769-926817)
chr5 (117-173)||(6537120-6537176)
[»] chr4 (5 HSPs)
chr4 (117-170)||(37870649-37870702)
chr4 (117-173)||(43499341-43499397)
chr4 (117-172)||(36651742-36651797)
chr4 (117-170)||(7743616-7743669)
chr4 (117-173)||(39059723-39059779)
[»] scaffold0300 (1 HSPs)
scaffold0300 (118-174)||(9622-9678)
[»] chr2 (6 HSPs)
chr2 (117-165)||(37648009-37648057)
chr2 (117-173)||(2702258-2702314)
chr2 (118-174)||(12410832-12410888)
chr2 (118-174)||(12422892-12422948)
chr2 (118-173)||(27271685-27271740)
chr2 (118-174)||(6764465-6764521)
[»] scaffold0041 (1 HSPs)
scaffold0041 (117-174)||(94924-94981)
[»] scaffold0037 (1 HSPs)
scaffold0037 (118-165)||(1022-1069)
[»] scaffold0074 (1 HSPs)
scaffold0074 (117-165)||(23838-23886)


Alignment Details
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 4532143 - 4532086
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 174  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||    
T  4532143 gcactccttgtgctgaaatctccagactttcagtattttaatccattttagtttcttc 4532086  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 33766400 - 33766456
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 173  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||    
T  33766400 gcactccttgtgctgaaatctccagactttcagtattttaatccattttagtttctt 33766456  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 34549407 - 34549464
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 174  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||| | ||||||    
T  34549407 gcactccttgtgctgaaatctccagacttttagtaatataatccattttagcttcttc 34549464  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 45432430 - 45432373
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 174  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||| | ||||||    
T  45432430 gcactccttgtgctgaaatctccagacttttagtaatataatccattttagcttcttc 45432373  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 51534534 - 51534478
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 173  Q
    ||||||||||||||||||||||||| ||||  ||||| ||||||||||| |||||||    
T  51534534 gcactccttgtgctgaaatctccaggctttcggtattttaatccattttagtttctt 51534478  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 19227943 - 19227886
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 174  Q
    ||||||||||||||||||||||||| |||| |||| | ||||||||||| | ||||||    
T  19227943 gcactccttgtgctgaaatctccaggctttcagtaatataatccattttagcttcttc 19227886  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 33936477 - 33936525
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttt 165  Q
    ||||||||||| |||||||||||||||||| |||| | |||||||||||    
T  33936477 gcactccttgtcctgaaatctccagactttcagtaatataatccatttt 33936525  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 4532245 - 4532217
Alignment:
Q  15 tcaccttgcttaggaatatttatgtaaca 43  Q
    |||||||||||||||||||||||||||||    
T  4532245 tcaccttgcttaggaatatttatgtaaca 4532217  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 9942657 - 9942602
Alignment:
Q  118 cactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 173  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||    
T  9942657 cactccttgtgctgaaatctccagactttcagtattttaatccattttagtttctt 9942602  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 28782071 - 28782014
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 174  Q
    ||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||||    
T  28782071 gcactccttgtgctgaaatctccaggctttcagtattttaatccattttagtttcttc 28782014  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 9948976 - 9949031
Alignment:
Q  119 actccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 174  Q
    ||||||||||||||||||| ||| |||| |||||| ||||||||||| ||||||||    
T  9948976 actccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttcttc 9949031  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 11621408 - 11621465
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 174  Q
    ||||||||||||||||||||||||| |||| |||| | ||||||||||| | ||||||    
T  11621408 gcactccttgtgctgaaatctccaggctttcagtaatataatccattttagcttcttc 11621465  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 40871358 - 40871301
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 174  Q
    ||||||||||||||||||||||||| |||||| || | ||||||||||| | ||||||    
T  40871358 gcactccttgtgctgaaatctccaggcttttaataatataatccattttagcttcttc 40871301  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 12912303 - 12912247
Alignment:
Q  118 cactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 174  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||| | ||||||    
T  12912303 cactccttgtgctgaaatctccagacttttagtaatataatccattttagcttcttc 12912247  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 165556 - 165610
Alignment:
Q  118 cactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttct 172  Q
    |||| |||||||||||||||| ||||||||| || | ||||||||||| ||||||    
T  165556 cacttcttgtgctgaaatctcaagacttttaataatataatccattttagtttct 165610  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 18972670 - 18972622
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttt 165  Q
    |||||||||||||||||||||| || ||||||||| | ||||| |||||    
T  18972670 gcactccttgtgctgaaatctcaaggcttttagtaatataatcaatttt 18972622  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 24393954 - 24394002
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttt 165  Q
    |||||||||||||||||||||| || ||||||||| | ||||| |||||    
T  24393954 gcactccttgtgctgaaatctcaaggcttttagtaatataatcaatttt 24394002  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 13089818 - 13089765
Alignment:
Q  121 tccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 174  Q
    ||||||||||||||||||||||||||||||| | ||||||||||| | ||||||    
T  13089818 tccttgtgctgaaatctccagacttttagtaatataatccattttagcttcttc 13089765  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 45547944 - 45548000
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 173  Q
    ||||||||||||||||||||||||| |||| |||| | ||||||||||| |||||||    
T  45547944 gcactccttgtgctgaaatctccaggctttcagtaatttaatccattttagtttctt 45548000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 4034357 - 4034300
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 174  Q
    |||||||||||||| |||||| ||||||||||||| | |||| |||||| | ||||||    
T  4034357 gcactccttgtgctaaaatcttcagacttttagtaatataattcattttagcttcttc 4034300  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 22639603 - 22639660
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 174  Q
    |||||||||||| ||||||||||| ||||| |||||| ||||||||||| ||||||||    
T  22639603 gcactccttgtgatgaaatctccaaactttcagtattttaatccattttagtttcttc 22639660  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 39143276 - 39143220
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 173  Q
    ||||||||| ||||||||||||||| ||||  ||||| ||||||||||| |||||||    
T  39143276 gcactccttatgctgaaatctccaggctttcggtattttaatccattttagtttctt 39143220  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 926769 - 926817
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttt 165  Q
    |||||||||||||||||||||||| | ||| |||| | |||||||||||    
T  926769 gcactccttgtgctgaaatctccaaattttcagtaatataatccatttt 926817  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 6537120 - 6537176
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 173  Q
    ||||||||| |||||||||||||||| ||| |||| | | ||||||||| |||||||    
T  6537120 gcactccttatgctgaaatctccagagtttcagtaatttcatccattttagtttctt 6537176  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 37870702 - 37870649
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgttt 170  Q
    |||||||||||||||||||||||||||||| |||| | ||||||||||| ||||    
T  37870702 gcactccttgtgctgaaatctccagactttgagtaatataatccattttagttt 37870649  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 43499341 - 43499397
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 173  Q
    ||||||||||||||||||||||||  |||| |||||| ||||||||||| |||||||    
T  43499341 gcactccttgtgctgaaatctccaagctttcagtattttaatccattttagtttctt 43499397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 36651797 - 36651742
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttct 172  Q
    |||||||||||||||||||||||| |||||   |||| ||||||||||| ||||||    
T  36651797 gcactccttgtgctgaaatctccaaactttcgatattttaatccattttagtttct 36651742  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 7743616 - 7743669
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgttt 170  Q
    ||||||||||||||||||||||||  |||| ||| || ||||||||||| ||||    
T  7743616 gcactccttgtgctgaaatctccatgctttcagttttttaatccattttagttt 7743669  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 39059779 - 39059723
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 173  Q
    ||||| ||||||||||| ||| |||||||| |||| | ||||||||||| |||||||    
T  39059779 gcactgcttgtgctgaattcttcagactttcagtaatttaatccattttagtttctt 39059723  T

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Target: scaffold0300 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 9622 - 9678
Alignment:
Q  118 cactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 174  Q
    |||| ||||||||||||||| ||| ||||||||||| ||||||||||| ||||||||    
T  9622 cacttcttgtgctgaaatcttcaggcttttagtattttaatccattttagtttcttc 9678  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 37648009 - 37648057
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttt 165  Q
    |||||||||||||||||||||||| ||||| |||||| |||||||||||    
T  37648009 gcactccttgtgctgaaatctccaaactttcagtattttaatccatttt 37648057  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 2702314 - 2702258
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 173  Q
    |||||||||||||||||||||  || |||| |||||| ||||||||||| |||||||    
T  2702314 gcactccttgtgctgaaatcttgaggctttcagtattttaatccattttagtttctt 2702258  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 12410832 - 12410888
Alignment:
Q  118 cactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 174  Q
    ||||| ||||| |||||||||||| |||| |||||| ||||||||||| ||||||||    
T  12410832 cactctttgtgatgaaatctccaggctttcagtattttaatccattttagtttcttc 12410888  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 12422892 - 12422948
Alignment:
Q  118 cactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 174  Q
    ||||| ||||| |||||||||||| |||| |||||| ||||||||||| ||||||||    
T  12422892 cactctttgtgatgaaatctccaggctttcagtattttaatccattttagtttcttc 12422948  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 27271685 - 27271740
Alignment:
Q  118 cactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 173  Q
    |||||||||||||||||||||||| |||| |||| | ||||| ||||| |||||||    
T  27271685 cactccttgtgctgaaatctccaggctttcagtaatttaatctattttagtttctt 27271740  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 6764465 - 6764521
Alignment:
Q  118 cactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 174  Q
    |||||||| |||||||||||||   |||| |||||| ||||||||||| ||||||||    
T  6764465 cactccttatgctgaaatctccgagctttcagtattttaatccattttagtttcttc 6764521  T

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Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 94924 - 94981
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 174  Q
    ||||||||||||||||||||||||| |||||| || | ||||||||||| | ||||||    
T  94924 gcactccttgtgctgaaatctccaggcttttaataatataatccattttagcttcttc 94981  T

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Target: scaffold0037 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 1022 - 1069
Alignment:
Q  118 cactccttgtgctgaaatctccagacttttagtattgtaatccatttt 165  Q
    |||||||| ||||||||||||||||||||| ||| | |||||||||||    
T  1022 cactccttatgctgaaatctccagactttttgtaatataatccatttt 1069  T

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Target: scaffold0074 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 23838 - 23886
Alignment:
Q  117 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttt 165  Q
    |||||||||||||||||||||| || ||||||||| | ||||| |||||    
T  23838 gcactccttgtgctgaaatctcaaggcttttagtaatataatcaatttt 23886  T

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