View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1422_low_6 (Length: 490)
Name: NF1422_low_6
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 477
Target Start/End: Complemental strand, 34640255 - 34639800
Alignment:
| Q |
18 |
gtgccaatatcaaagcaaatggaatatttcaaacaatacaaaaagaggttggagactaagcttggtaggcaaagaactgaaaatcatatgaataacgcat |
117 |
Q |
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| T |
34640255 |
gtgccaatatcaaagcaaatggaatatttcaaacaatacaaaaagaggttggagactaagcttggtaggcaaagaactgaaaatcatatgaataacgcat |
34640156 |
T |
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| Q |
118 |
tatttttcataagtgctggtacaaatgacttcgttattaattattttacgctaccaatacgaagaaaaagctatgacgttgtaacttacgggcatttctt |
217 |
Q |
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| T |
34640155 |
tatttttcataagtgctggtacaaatgacttcgttattaattattttacgctaccaatacgaagaaaaagctatgacgttgtaacttacgggcatttctt |
34640056 |
T |
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| Q |
218 |
gcttcaaaaagtcaaagatttcatacaggtaaaattaattcggttttgaatcaattacacatttcttttataccaagatttatannnnnnnnaagaaaac |
317 |
Q |
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| T |
34640055 |
gcttcaaaaagtcaaagatttcatacaggt--aattaattaggttttgaatcaattacacatttcttttataccaagatttatattttttt--agaaaac |
34639960 |
T |
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| Q |
318 |
caatgatgatagatcgatctaccatctacttttgtatttatctctttgatcgagtatctatttttagaaattgagagtacaccaactaagtctattctag |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34639959 |
aaatgatgatagatcgatctaccatctacttttgtatttatctctttgattgagtatctatttttagaaattgagagtacaccaactaagtctattctag |
34639860 |
T |
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| Q |
418 |
tgccctttgaacctttagtacagtgcataaatattctcatgataagctctttttggcttc |
477 |
Q |
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| T |
34639859 |
tgccctttgaacctttagtacagtgcataaatatactcatgataagctctttttggcttc |
34639800 |
T |
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