View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1422_low_7 (Length: 461)
Name: NF1422_low_7
Description: NF1422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1422_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 11 - 445
Target Start/End: Complemental strand, 30278289 - 30277864
Alignment:
| Q |
11 |
cagagatcatatttcatgtccagcaagtggtgaatgtgaggcctataaagagggatctatgactgtctaatatattcttaattttttgtaaaactcgttt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30278289 |
cagagatcatatttcatgtccagcaagtggtgaatgtgaggcctataaagagggatctatgactgtctaatatattcttaattttttgtaaaactggttt |
30278190 |
T |
|
| Q |
111 |
ttatgttattttctcgtcttacatnnnnnnncacacactttaagccttttaaatgtattgagccagctaatttagaaattaaattactacatacaaaatt |
210 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30278189 |
ttatgttattttctcgtcttacataaaaaaacacacactttaagccttttaaatgtattgagccggctaatttagaaattaaattactacatacaaaatt |
30278090 |
T |
|
| Q |
211 |
tgagtaacaaaatataggacaaaaatgatgatttacctatcagagaattttctgaagtttcttctcacttgtcactagtcaaaacattctatcctcatgc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30278089 |
tgagtaacaaaatataggacaaaaatgatgatttacctatcagagaattttctaaagtttcttctcacttgtcactagtcaaaacattctatcctcatgc |
30277990 |
T |
|
| Q |
311 |
agacacagaataagacagacacacatgagtagagtagaatacaaaatggacgtagaataaaacaaaggacatgtacatgcaaaatataaaacaaaagcag |
410 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30277989 |
agacacagaataagacagacacac---------gtagaatacaaaatggacgtagaataaaacaaaggacatgtacatgcaaaatataaaacaaaagcag |
30277899 |
T |
|
| Q |
411 |
ttgttaattgacgaatatatcaatgaacaagtatt |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
30277898 |
ttgttaattgacgaatatatcaatgaacaagtatt |
30277864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University