View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14230_high_2 (Length: 456)
Name: NF14230_high_2
Description: NF14230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14230_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 152 - 442
Target Start/End: Original strand, 6854590 - 6854878
Alignment:
| Q |
152 |
accgataaccatgtacctaaaaataagtcaattttagcattcaacaagtacagaaaatgataacacttcagtgttaaaaacctgagcttcaaatatttga |
251 |
Q |
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| T |
6854590 |
accgataaccatgtacttaaacataagtcaatt--accattcaacaagtacagaaaatgaaaacacttcggtgttcaaaacctgagcttcaaatctttgt |
6854687 |
T |
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| Q |
252 |
taactgaattaaggcgaaatgaacttactggcgaagaccggtactgatataatcataggaactcatgacagcatagtgagttccagcatccattggagct |
351 |
Q |
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| T |
6854688 |
taactgaattaaggtgaaatgaacttactggcgaagaccagtactgatataatcataggagctcatgacagcatagtgagttccagcatccattggagct |
6854787 |
T |
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| Q |
352 |
tgaaagacactgtccacctttccctttccccttgtgatatcctgttggtcatctgaggtatcataggcaagtccagcccatctgtcctttg |
442 |
Q |
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| T |
6854788 |
tgaaagacactgtccacctttccctttcccctagtgatatcctgttggtcatccgaggtgtcataagcaagcccagcccatctgtcctttg |
6854878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 6854392 - 6854531
Alignment:
| Q |
5 |
acacaattttaacaaaacggatgtctacaacaagtttaggtagtgattcattagaatgaatgagattcatcactgtgaatcgtggttcatcaatcatcac |
104 |
Q |
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| T |
6854392 |
acacaattttaacaaaaaggcagactacaacaagtttaggtagtgattcattagaatgaatgagattcatcactgtgaattgtggt-------tcatcac |
6854484 |
T |
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| Q |
105 |
aatgattcgggactcaagatcagattcatgttcataatagagatttg |
151 |
Q |
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| T |
6854485 |
aatgaatcgagattgaagatcagattcatgttcataatagatatttg |
6854531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 19454021 - 19453965
Alignment:
| Q |
41 |
taggtagtgattcattagaatgaat-gagattcatcactgtgaatcgtggttcatca |
96 |
Q |
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| T |
19454021 |
taggtagtgattcattagaatgaatcaagattcatcatagtgaatcgggattcatca |
19453965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 8966932 - 8966971
Alignment:
| Q |
38 |
gtttaggtagtgattcattagaatgaa-tgagattcatca |
76 |
Q |
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| T |
8966932 |
gtttaggtagtgattcattagaatgaattgagattcatca |
8966971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 25016649 - 25016588
Alignment:
| Q |
36 |
aagtttaggtagtgattcattagaatgaa-tgagattcatcactgtgaatcgtggttcatca |
96 |
Q |
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| T |
25016649 |
aagtttaggtaatgattcattagaatgaattgagattcattaaagtgaatcgagattcatca |
25016588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 30863901 - 30863937
Alignment:
| Q |
29 |
ctacaacaagtttaggtagtgattcattagaatgaat |
65 |
Q |
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| T |
30863901 |
ctacaccaagtttaggtaatgattcattagaatgaat |
30863937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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