View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14230_high_3 (Length: 437)
Name: NF14230_high_3
Description: NF14230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14230_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 29837624 - 29837223
Alignment:
| Q |
18 |
atccttcggagttgatcctatacatcccatctctgaaggtttactatacctgctgaatgctgatacaaacaagttacaataaatcaacctaagaatctct |
117 |
Q |
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| T |
29837624 |
atcctttggagttgatcctatacatcccatctctgaaggtttattatacctgctgaatgctgatacaaacaagttacaataaatcaacctaagaatctct |
29837525 |
T |
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| Q |
118 |
atgattcatagaaatgttgattcattttattgaagtattatgatattgaaaaccacttacaaggaagctaagagattaacacactaaaaagtcacaaaca |
217 |
Q |
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| T |
29837524 |
atgattcatagaaatgttgattcattttattgaagtattatgatattgaaaaccacttacaaggaagctaagagattaacac--taaaaagtcactaaca |
29837427 |
T |
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| Q |
218 |
agactaattaaatgccaagttgccaaccaacaaaaagtggtattaggttgctcacgagaagcattacatttaacttataatggcactctccattctccac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29837426 |
agactaattaaatgccaagttgccaaccaacaaaaagtagtattaggttgctcacgagaagcattacatttaacttataatggcactctccattctccac |
29837327 |
T |
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| Q |
318 |
atcattactttatataaacaaacaaatattttattcattagcattatttttgtacccttttttaggctcttgtcatcatcaccattaatgattgtctgtt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29837326 |
atcattactttatataaacaaacaaatattttattcattagcattatttttgtacccttttttaggctcttgtcatcatcaccattaatgattgtctctt |
29837227 |
T |
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| Q |
418 |
attc |
421 |
Q |
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|||| |
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| T |
29837226 |
attc |
29837223 |
T |
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