View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14230_low_1 (Length: 740)

Name: NF14230_low_1
Description: NF14230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14230_low_1
NF14230_low_1
[»] chr8 (9 HSPs)
chr8 (52-145)||(3810689-3810783)
chr8 (52-145)||(33473867-33473961)
chr8 (633-716)||(6145359-6145442)
chr8 (658-713)||(6179644-6179699)
chr8 (637-720)||(6188397-6188480)
chr8 (52-127)||(31030384-31030460)
chr8 (52-145)||(40041273-40041367)
chr8 (64-119)||(19711926-19711981)
chr8 (514-577)||(6188309-6188373)
[»] chr7 (4 HSPs)
chr7 (52-145)||(42148715-42148808)
chr7 (58-147)||(26502567-26502656)
chr7 (58-147)||(26590058-26590147)
chr7 (58-146)||(19365533-19365621)
[»] chr3 (9 HSPs)
chr3 (52-146)||(54718329-54718423)
chr3 (52-143)||(11433693-11433784)
chr3 (58-146)||(33461226-33461314)
chr3 (72-145)||(5834720-5834793)
chr3 (53-147)||(32319297-32319392)
chr3 (58-141)||(33573585-33573668)
chr3 (18-145)||(6876500-6876631)
chr3 (58-146)||(35585364-35585452)
chr3 (59-120)||(29750904-29750965)
[»] chr1 (5 HSPs)
chr1 (52-145)||(40371716-40371810)
chr1 (52-143)||(32055182-32055273)
chr1 (56-149)||(12259163-12259256)
chr1 (72-145)||(49605258-49605331)
chr1 (73-141)||(42282392-42282460)
[»] chr2 (4 HSPs)
chr2 (64-142)||(40606911-40606989)
chr2 (52-143)||(24127945-24128036)
chr2 (52-146)||(5188868-5188962)
chr2 (58-145)||(32035176-32035263)
[»] chr4 (7 HSPs)
chr4 (55-151)||(14272905-14273000)
chr4 (52-147)||(54734620-54734716)
chr4 (53-147)||(44253879-44253973)
chr4 (59-136)||(44255729-44255806)
chr4 (72-145)||(51780173-51780246)
chr4 (61-137)||(33283006-33283082)
chr4 (402-460)||(1733414-1733472)
[»] chr5 (2 HSPs)
chr5 (53-145)||(5125232-5125325)
chr5 (55-145)||(13678726-13678816)
[»] chr6 (1 HSPs)
chr6 (72-145)||(3342470-3342543)
[»] scaffold1414 (1 HSPs)
scaffold1414 (58-142)||(935-1019)
[»] scaffold0057 (1 HSPs)
scaffold0057 (53-109)||(39509-39565)


Alignment Details
Target: chr8 (Bit Score: 71; Significance: 9e-32; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 3810783 - 3810689
Alignment:
Q  52 gattgagttttattttatacaaa-gggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataacttcc 145  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||    
T  3810783 gattgagttttattttatataaaagggtaaatttggtactttgtgtcaaatgttggggtcaaggtataaatgtaggggtgtggggtataacttcc 3810689  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 33473867 - 33473961
Alignment:
Q  52 gattgagttttattttatacaaag-ggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataacttcc 145  Q
    ||||||||||| ||||||| |||  |||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||    
T  33473867 gattgagttttcttttatataaaaaggtaaatttggtacattgtgtcaaatgttgaggtcaaagtataaatgtagggatgtgggatataacttcc 33473961  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 633 - 716
Target Start/End: Original strand, 6145359 - 6145442
Alignment:
Q  633 attaaatacttacttagatttgctcgagtcccatccagatagattggcagccaacttgagagcagttctccactcggacactct 716  Q
    ||||||||| |||  | ||||||  |||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||    
T  6145359 attaaatacataccgatatttgcgagagtcccatccagatatattggcagccatcttgagagcagctctccactcggacactct 6145442  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 658 - 713
Target Start/End: Original strand, 6179644 - 6179699
Alignment:
Q  658 gagtcccatccagatagattggcagccaacttgagagcagttctccactcggacac 713  Q
    |||||||||||||||| |||||||||||| |||||||||| | |||||||||||||    
T  6179644 gagtcccatccagatatattggcagccaatttgagagcagctttccactcggacac 6179699  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 637 - 720
Target Start/End: Original strand, 6188397 - 6188480
Alignment:
Q  637 aatacttacttagatttgctcgagtcccatccagatagattggcagccaacttgagagcagttctccactcggacactctgtct 720  Q
    |||||||||  | ||||||  |||||||||||||||| |||||||||||| |||||||||| | ||||||| |||||| |||||    
T  6188397 aatacttaccgatatttgcgagagtcccatccagatatattggcagccaaattgagagcagctttccactcagacactttgtct 6188480  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 31030384 - 31030460
Alignment:
Q  52 gattgagttttattttatacaaagggtaaatttggtac-tttgtgtcaaatattggggtcaaagtataaatgtaggg 127  Q
    ||||||||||||||||||| ||| |||||||||||||| ||| |||||||| ||||||| |  ||||| ||||||||    
T  31030384 gattgagttttattttatataaaaggtaaatttggtacttttatgtcaaatgttggggtgagggtatatatgtaggg 31030460  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 40041273 - 40041367
Alignment:
Q  52 gattgagttttattttatacaaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgt-agggatgtggggtataacttcc 145  Q
    ||||| ||||| |||||| ||||| |||||||||||| ||||||| |||| ||||| | || ||||||||||  ||| |||||| ||||||||||    
T  40041273 gattgtgttttgttttatgcaaagagtaaatttggtagtttgtgttaaatgttgggatgaacgtataaatgtcgggggtgtgggatataacttcc 40041367  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 19711926 - 19711981
Alignment:
Q  64 ttttatacaaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataa 119  Q
    ||||||| ||||||||||||||||| ||| |||||||| ||||||| || ||||||    
T  19711926 ttttatataaagggtaaatttggtagtttatgtcaaatgttggggtgaaggtataa 19711981  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 514 - 577
Target Start/End: Original strand, 6188309 - 6188373
Alignment:
Q  514 catacaatataaactataaacagttt-aaaagttacttaggagtatatat-aacataagaattaat 577  Q
    |||||||||||| ||||  ||||||| ||||||||||||||||||||| | |||||||||||||||    
T  6188309 catacaatataa-ctatgtacagtttcaaaagttacttaggagtatatgtaaacataagaattaat 6188373  T

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Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 42148808 - 42148715
Alignment:
Q  52 gattgagttttattttatacaaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataacttcc 145  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||| | ||  |||||||||||    
T  42148808 gattaagttttattttatataaagggtaaatttggtactttgtgtcaaatgttggggtcaacgtataaatgtaggggtatgaagtataacttcc 42148715  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 26502656 - 26502567
Alignment:
Q  58 gttttattttatacaaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataacttccta 147  Q
    ||||| ||||||| | |||||||||| |||| |||||||||||| ||||||| || |||||||||||||| ||||||||||||| |||||    
T  26502656 gttttgttttataaagagggtaaattgggtagtttgtgtcaaatgttggggtaaaggtataaatgtaggggtgtggggtataacgtccta 26502567  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 26590058 - 26590147
Alignment:
Q  58 gttttattttatacaaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataacttccta 147  Q
    ||||| ||||||| | |||||||||| |||| |||||||||||| ||||||| || |||||||||||||| ||||||||||||| |||||    
T  26590058 gttttgttttataaagagggtaaattgggtagtttgtgtcaaatgttggggtaaaggtataaatgtaggggtgtggggtataacgtccta 26590147  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 19365621 - 19365533
Alignment:
Q  58 gttttattttatacaaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataacttcct 146  Q
    ||||| ||||||| ||||||||| ||||||| ||| ||| |||| ||||||| || |||||||||||||| | ||||||||||| ||||    
T  19365621 gttttgttttatataaagggtaattttggtattttatgttaaatgttggggtaaaggtataaatgtaggggtctggggtataacgtcct 19365533  T

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Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 54718423 - 54718329
Alignment:
Q  52 gattgagttttattttatacaaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataacttcct 146  Q
    |||||| |||||||||||| |||| |||||||||| ||||| ||| |||| |||||||||| |||||||||||||| ||||||||||||||||||    
T  54718423 gattgaattttattttatataaagagtaaatttggaactttatgttaaatgttggggtcaaggtataaatgtaggggtgtggggtataacttcct 54718329  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 11433693 - 11433784
Alignment:
Q  52 gattgagttttattttatacaaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataactt 143  Q
    ||||| ||||| |||||| ||||||||||||||| || ||||||| |||| ||||||| ||||||||||||||||| |||||||||||||||    
T  11433693 gattgtgttttgttttatgcaaagggtaaatttgatagtttgtgttaaatgttggggtgaaagtataaatgtagggttgtggggtataactt 11433784  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 33461314 - 33461226
Alignment:
Q  58 gttttattttatacaaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataacttcct 146  Q
    ||||| ||||||| | |||||||||| | || |||||||||||| ||||||| || |||||||||||||| ||||||||||||| ||||    
T  33461314 gttttgttttatatagagggtaaattggatagtttgtgtcaaatgttggggtaaaggtataaatgtaggggtgtggggtataacgtcct 33461226  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 5834793 - 5834720
Alignment:
Q  72 aaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataacttcc 145  Q
    |||||||||||| || | |||| || ||||||||||||||| |||||||||||||| ||||||||| |||||||    
T  5834793 aaagggtaaattgggcagtttgagtaaaatattggggtcaaggtataaatgtaggggtgtggggtaaaacttcc 5834720  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 147
Target Start/End: Complemental strand, 32319392 - 32319297
Alignment:
Q  53 attgagttttattttatacaaagggtaaatttggtactttgtgtcaaatatt-ggggtcaaagtataaatgtagggatgtggggtataacttccta 147  Q
    |||| ||||||||||||| ||||| ||||||||||| ||||||| |||| || ||||| || ||||||  |||||  |||||||||||||||||||    
T  32319392 attgtgttttattttatataaaggataaatttggtagtttgtgtaaaatgttgggggttaaggtataatagtaggagtgtggggtataacttccta 32319297  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 33573668 - 33573585
Alignment:
Q  58 gttttattttatacaaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataac 141  Q
    ||||| ||||||| ||||||||| ||| ||| ||||||| |||| ||||||| || |||||||||||||| ||| |||||||||    
T  33573668 gttttgttttatataaagggtaatttttgtagtttgtgttaaatgttggggtaaaggtataaatgtaggggtgtagggtataac 33573585  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 6876500 - 6876631
Alignment:
Q  18 ttttccagaaaaaatgtagggtgaacaa----aatagcgattgagttttattttatacaaagggtaaatttggtactttgtgtcaaatattggggtcaaa 113  Q
    ||||||||||||||||| ||||||| ||    ||  | ||||| ||||||||||| | ||| |||||||||| || ||||||| |||| | ||| ||||     
T  6876500 ttttccagaaaaaatgtggggtgaagaagtaaaagtgtgattgtgttttattttacaaaaatggtaaatttgatagtttgtgttaaatgtcgggatcaag 6876599  T
Q  114 gtataaatgtagggatgtggggtataacttcc 145  Q
    ||||||||| |||| ||| |||||||||||||    
T  6876600 gtataaatgcaggggtgttgggtataacttcc 6876631  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 35585364 - 35585452
Alignment:
Q  58 gttttattttatacaaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataacttcct 146  Q
    |||||||||| || |||||||||| |||||| ||||| | |||| ||||||| || ||||||  |||||| | ||||||||||||||||    
T  35585364 gttttattttttataaagggtaaaattggtagtttgtttaaaatgttggggtgaaggtataatagtaggggtatggggtataacttcct 35585452  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 29750904 - 29750965
Alignment:
Q  59 ttttattttatacaaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaa 120  Q
    |||||||||||| ||||| ||||||| ||||||| | |||||| ||||||||||| ||||||    
T  29750904 ttttattttatataaaggataaatttagtactttatatcaaatgttggggtcaaaatataaa 29750965  T

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Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 40371716 - 40371810
Alignment:
Q  52 gattgagttttattttatacaaa-gggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataacttcc 145  Q
    ||||||||||||||||||  ||| ||||||||||| |||||| |||||||||| | |||||| |||||||||||||| |||||||||||||||||    
T  40371716 gattgagttttattttatgtaaaagggtaaatttgatactttatgtcaaatatcgaggtcaatgtataaatgtaggggtgtggggtataacttcc 40371810  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 32055182 - 32055273
Alignment:
Q  52 gattgagttttattttatacaaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataactt 143  Q
    |||||||| |||||||||| ||||||||||||||  ||||||||| |||| || ||||||| |||||||| ||||| || ||||||||||||    
T  32055182 gattgagtattattttatataaagggtaaatttgaaactttgtgttaaatgttagggtcaaggtataaatatagggttgcggggtataactt 32055273  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 56 - 149
Target Start/End: Original strand, 12259163 - 12259256
Alignment:
Q  56 gagttttattttatacaaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataacttcctagt 149  Q
    ||||||||||||  |  |||| |||||||| || ||| ||||||||||||||||||| |||||||||||||| |||| ||| ||||||||||||    
T  12259163 gagttttattttgaattaaggataaatttgatagtttatgtcaaatattggggtcaaggtataaatgtaggggtgtgaggtttaacttcctagt 12259256  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 49605331 - 49605258
Alignment:
Q  72 aaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataacttcc 145  Q
    ||||| |||| ||| || ||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||    
T  49605331 aaaggataaacttgatagtttgtgtcaaatattagggtcgatgtataaatgtagggatgtggggtataacttcc 49605258  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 42282392 - 42282460
Alignment:
Q  73 aagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataac 141  Q
    |||||||| ||||||| ||||||| |||| |||||||  | |||||||||||||| ||| |||||||||    
T  42282392 aagggtaattttggtagtttgtgttaaatgttggggtataggtataaatgtaggggtgtagggtataac 42282460  T

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Target: chr2 (Bit Score: 51; Significance: 8e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 40606911 - 40606989
Alignment:
Q  64 ttttatacaaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataact 142  Q
    ||||||| ||||||||||||||||| |||||||||||| ||||||| || ||||||||| |||| ||||||||||||||    
T  40606911 ttttatataaagggtaaatttggtagtttgtgtcaaatgttggggtgaaggtataaatgcaggggtgtggggtataact 40606989  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 24128036 - 24127945
Alignment:
Q  52 gattgagttttattttatacaaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataactt 143  Q
    ||||| ||||| ||||||| ||| | ||||||||| | ||||||| |||| ||||||| || |||||||||||||| | |||||||||||||    
T  24128036 gattgtgttttgttttatataaaagataaatttggaagtttgtgtaaaatgttggggtgaaggtataaatgtaggggtatggggtataactt 24127945  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 5188868 - 5188962
Alignment:
Q  52 gattgagttttattttatacaaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataacttcct 146  Q
    |||||| |||||||||||  |||||||| | || | ||||| ||| |||  ||||||||||  ||||||||||||| ||||||||||||||||||    
T  5188868 gattgaattttattttatgtaaagggtataattcgaactttatgttaaaggttggggtcaagatataaatgtaggggtgtggggtataacttcct 5188962  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 145
Target Start/End: Original strand, 32035176 - 32035263
Alignment:
Q  58 gttttattttatacaaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataacttcc 145  Q
    |||| |||||||| ||||||||||||||||| ||  ||| |||| ||||||| |||||||||  |||||| | | |||||||||||||    
T  32035176 gtttaattttatataaagggtaaatttggtagttcatgtaaaatgttggggtaaaagtataatagtaggggtatagggtataacttcc 32035263  T

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Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 14273000 - 14272905
Alignment:
Q  55 tgagttttattttatacaaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataacttcctagtat 151  Q
    |||||||||||||||| |||||||||||| |||| |||| || |||| ||||| || |||||||| ||||||| ||||||||| |||||||| ||||    
T  14273000 tgagttttattttatataaagggtaaattaggtagtttgagtgaaatgttgggatc-aagtataactgtaggggtgtggggtaaaacttcctggtat 14272905  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 54734716 - 54734620
Alignment:
Q  52 gattgagttttatttt-atacaaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataacttccta 147  Q
    ||||| |||||||||| ||| ||||||||||||||||| |||||||| ||| || |||| || |||||| ||||||| | |||||||||||||||||    
T  54734716 gattgtgttttatttttatataaagggtaaatttggtagtttgtgtctaatgttagggtgaaggtataattgtaggggtatggggtataacttccta 54734620  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 147
Target Start/End: Complemental strand, 44253973 - 44253879
Alignment:
Q  53 attgagttttattttatacaaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataacttccta 147  Q
    |||| ||||||||||||| |||||||||| ||   ||||||||| |||| ||||||| || |||||||| || || |||||||||||||||||||    
T  44253973 attgtgttttattttatataaagggtaaaattaaaactttgtgttaaatgttggggtgaaggtataaatatatgggtgtggggtataacttccta 44253879  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 44255729 - 44255806
Alignment:
Q  59 ttttattttatacaaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggt 136  Q
    |||||||||||| |||||| ||| |||| ||||||||| |||||||| ||| ||  ||||||||||||| ||||||||    
T  44255729 ttttattttatataaagggcaaaattggaactttgtgttaaatattgaggtgaagatataaatgtaggggtgtggggt 44255806  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 51780173 - 51780246
Alignment:
Q  72 aaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataacttcc 145  Q
    ||||||||| || |||| ||||  |||||| ||||| |||||| |||||||||||| ||||||||| |||||||    
T  51780173 aaagggtaatttaggtagtttggatcaaatcttgggatcaaagaataaatgtaggggtgtggggtaaaacttcc 51780246  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 33283006 - 33283082
Alignment:
Q  61 ttattttatacaaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggta 137  Q
    |||||||||| |||||||||||| | || |||| || ||||||||||||||| ||||||  |||||| | |||||||    
T  33283006 ttattttatataaagggtaaattagatagtttgagtgaaatattggggtcaaggtataaccgtaggggtatggggta 33283082  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 402 - 460
Target Start/End: Complemental strand, 1733472 - 1733414
Alignment:
Q  402 aaaaatgtacatccagtgaataactaccagatgtatatctaaagggtcttagagatatt 460  Q
    ||||| ||||||| |||  |||||||||| |||||||| ||| ||||||||||||||||    
T  1733472 aaaaacgtacatctagtagataactaccaaatgtatatttaaggggtcttagagatatt 1733414  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 53 - 145
Target Start/End: Complemental strand, 5125325 - 5125232
Alignment:
Q  53 attgagttttattttatacaaagggtaaatttggtactttgtgtcaaatatt-ggggtcaaagtataaatgtagggatgtggggtataacttcc 145  Q
    |||| ||||||||||||| |||||||||||||| || ||||| | |||| || |||||| | ||||||  |||||| |||||||||||||||||    
T  5125325 attgtgttttattttataaaaagggtaaatttgatagtttgtataaaatgttgggggtcgaggtataatagtaggggtgtggggtataacttcc 5125232  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 145
Target Start/End: Original strand, 13678726 - 13678816
Alignment:
Q  55 tgagttttattttatacaaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataacttcc 145  Q
    |||||||||||||||| |||||||||||  | || |||  || |||| || ||||||| ||||||  |||||| ||||||||| |||||||    
T  13678726 tgagttttattttatataaagggtaaatcagatagtttaagtgaaatgttagggtcaaggtataaccgtaggggtgtggggtaaaacttcc 13678816  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 3342543 - 3342470
Alignment:
Q  72 aaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataacttcc 145  Q
    |||||||||||| |  | |||| || ||||||||||||||| ||| |||| ||||||||||||||| |||||||    
T  3342543 aaagggtaaattggacagtttgagtaaaatattggggtcaatgtagaaatatagggatgtggggtaaaacttcc 3342470  T

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Target: scaffold1414 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1414
Description:

Target: scaffold1414; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 1019 - 935
Alignment:
Q  58 gttttattttatacaaagggtaaatttggtactttgtgtcaaatattggggtcaaagtataaatgtagggatgtggggtataact 142  Q
    |||||||||||||  |||||||||||||||| ||| | | |||| |||| || || ||||||  |||||| ||||||||||||||    
T  1019 gttttattttatatgaagggtaaatttggtagtttatataaaatgttggagtaaaggtataatagtaggggtgtggggtataact 935  T

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Target: scaffold0057 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 39509 - 39565
Alignment:
Q  53 attgagttttattttatacaaagggtaaatttggtactttgtgtcaaatattggggt 109  Q
    |||| ||||| ||||||| ||||| ||||||||||| |||||||||||| |||||||    
T  39509 attgtgttttgttttatataaaggataaatttggtagtttgtgtcaaatgttggggt 39565  T

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