View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14230_low_4 (Length: 429)
Name: NF14230_low_4
Description: NF14230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14230_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 424
Target Start/End: Complemental strand, 1704291 - 1703883
Alignment:
| Q |
16 |
gaaacattgttgttcatcaaggcgtgtaataaccttgatacaaaaggtaactgcagaagttattggtacatattttctagtgtttgctggttgtggtgct |
115 |
Q |
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| T |
1704291 |
gaaacattgttgttcatcaaggcgtgtaataaccttgatacaaaaggtaactgcagaagttattggtacatattttctagtgtttgctgggtgtggtgct |
1704192 |
T |
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| Q |
116 |
gtagcagtaaacaaaatacatggctctatcacttttccagggatttgtatcacttggggattgattgtaacagtcatgtgttactcagttggtcatatct |
215 |
Q |
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| T |
1704191 |
gtagcagtaaacaagatccatggctctatcacttttccagggatttgcatcacttgggggttgattgtaacagtcatgtgttactcagttggtcatatct |
1704092 |
T |
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| Q |
216 |
ctggaggcctcttcaaccctgctgttaccatcacctgggctatttttcgccgaatcacgattaaagaggctcctttgtacattcttgctcaattacttgg |
315 |
Q |
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| T |
1704091 |
ctggaggcctcttcaaccctgctgttaccatcacctgggctatttttcgccgaatcacgattaaagaggctcctttgtacattcttgctcaattacttgg |
1703992 |
T |
|
| Q |
316 |
ttctacacttgcaagtgtaacgttatctttaatgtttgacatcacacccgaatcttatttcggaactgtaccggtcggatcaaactgtcaatctttagtg |
415 |
Q |
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| T |
1703991 |
ttctacacttgcaagtgtaacgttatctttaatgtttgacatcacacccgaatcatatttcggaactgtaccggtcggatcaaactgtcaatctttagtg |
1703892 |
T |
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| Q |
416 |
ttagaaatc |
424 |
Q |
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| T |
1703891 |
ttagaaatc |
1703883 |
T |
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Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 34019045 - 34019227
Alignment:
| Q |
67 |
tgcagaagttattggtacatattttctagtgtttgctggttgtggtgctgtagcagtaaacaaaatacatggctctatcacttttccagggatttgtatc |
166 |
Q |
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||||||| | ||||| ||||||||| | ||||||||||| ||||| |||||||||| |||| || |||| ||| |||| ||||||||| | |||||| |
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| T |
34019045 |
tgcagaaatcattgggacatattttgtggtgtttgctggatgtgggtctgtagcagtggacaagatctatgggtctgtcacatttccaggggtatgtatc |
34019144 |
T |
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| Q |
167 |
acttggggattgattgtaacagtcatgtgttactcagttggtcatatctctggaggcctcttcaaccctgctgttaccatcac |
249 |
Q |
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| T |
34019145 |
acttgggggcttattgtaatggtcatgtcttactctgttggtcatatctctggaggacatttcaaccctgctgttaccatcac |
34019227 |
T |
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