View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14230_low_5 (Length: 420)
Name: NF14230_low_5
Description: NF14230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14230_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 44869941 - 44870347
Alignment:
| Q |
1 |
gctcgatgacaacacccaacagaaagcagggtaaaatatataatattgatgctactttagtcagtgaatatcaaagatttgcatagaatgtgtatttgag |
100 |
Q |
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| T |
44869941 |
gctcgatgacaacacccaacagaaagcagggtaaaatatataatattgatgctactttagtcagtgaatatcaaagatttgcatagaatgtgtatttgag |
44870040 |
T |
|
| Q |
101 |
atactgaatgttattttataaaggctaggacgttgtggtttgttgaagaattatgaaaagtagatttaatattcgtctctttcatacacacacatatgtc |
200 |
Q |
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| T |
44870041 |
atactgaatgttattttataaaggctaggaccttgtggtttgttgaagaattatgaaaagcagatttaatattcgtctctttcat--acacagatatgtg |
44870138 |
T |
|
| Q |
201 |
tatgtgagcacatgttttttaaac---nnnnnnnnnnnnngatacatatgcacatacaagcttttataataagggataatataacaatgttgagttgtga |
297 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44870139 |
tatgtgagcgcatgttttttaaacaaaaaaaaaaaaaaaagatacatatgcacatacaagcttttataataagggataatataacaatgttgagttgtga |
44870238 |
T |
|
| Q |
298 |
gggggaggggtaaggagtaaggaccagtatctgcccaccccctttcccctacttccatttgtccgcacaacacaagaagcaagggtcattggtatttata |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
44870239 |
gggggaggggtaaggagtaaggaccagtatctgcccaccccctttcccctacttccatttgtccgtacaacacaagaagcaagggtcattggtattgata |
44870338 |
T |
|
| Q |
398 |
ggcagttta |
406 |
Q |
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||||||||| |
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| T |
44870339 |
ggcagttta |
44870347 |
T |
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