View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14230_low_6 (Length: 413)
Name: NF14230_low_6
Description: NF14230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14230_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 80 - 404
Target Start/End: Original strand, 47265752 - 47266076
Alignment:
| Q |
80 |
aaatatttgattgagattcgatgtttttgtgcttagatggagacaaagagaagaccaatgaaggattacatggatatagttcagagagacattgatccaa |
179 |
Q |
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| T |
47265752 |
aaatatttgatcgagattcgatgtttttgtacttagatggagacaaagagaagaccaatgaaggattacatggatatagttcagagagacattgatccaa |
47265851 |
T |
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| Q |
180 |
aaatgagaggaatattgattgattggttagtagaagttgttgaagaatacaagcttcaaaacgatacacttcatcgcgctgtttcatacatagataggtt |
279 |
Q |
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| T |
47265852 |
aaatgagaggaatattgattgattggttagtagaagttgttgaagaatacaagcttcaaaacgatacacttcatcgcgctgtttcatacatagataggtt |
47265951 |
T |
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| Q |
280 |
cctatcttattaccctatctgtagggtcaagcttcaattgctgggtgtttcatccatgtacattgcatcgtaagccttctatacccgctttgaattttgt |
379 |
Q |
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| T |
47265952 |
cctatcttattaccctatctgtagggtcaagcttcaattgctgggtgtttcatccatgtacattgcatcgtaagccttctatacccgctttgaattttgt |
47266051 |
T |
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| Q |
380 |
gaatgatttttctttttatattctt |
404 |
Q |
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| T |
47266052 |
gaatgatttttctttttattttctt |
47266076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 111 - 359
Target Start/End: Original strand, 47258414 - 47258662
Alignment:
| Q |
111 |
cttagatggagacaaagagaagaccaatgaaggattacatggatatagttcagagagacattgatccaaaaatgagaggaatattgattgattggttagt |
210 |
Q |
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| T |
47258414 |
cttagttggaggaaaagagaagaccaatgaaggattacatggagatacttcagagatacattactccagaattgagaggaaaattggtggattggttagt |
47258513 |
T |
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| Q |
211 |
agaagttgttgaagaatacaagcttcaaaacgatacacttcatcgcgctgtttcatacatagataggttcctatcttattaccctatctgtagggtcaag |
310 |
Q |
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| T |
47258514 |
agaagttgctgaagaatacaagcttcataatgatacacttcatcttgctgtatcatacatagatatattcctatcttctcaccctatcagaaggatcaac |
47258613 |
T |
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| Q |
311 |
cttcaattgctgggtgtttcatccatgtacattgcatcgtaagccttct |
359 |
Q |
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| T |
47258614 |
cttgaattgttgggtgtttcatccttctacattgcatcgtaagccttct |
47258662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 47265652 - 47265704
Alignment:
| Q |
19 |
ccatcgaggtaatcttatgggtctttacacactatttcaaaattgtatatata |
71 |
Q |
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| T |
47265652 |
ccatcgaggtaatcttatgggtctttacacactatttcaaaattgtatatata |
47265704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 47249767 - 47249720
Alignment:
| Q |
308 |
aagcttcaattgctgggtgtttcatccatgtacattgcatcgtaagcc |
355 |
Q |
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| T |
47249767 |
aagcttcagttgctcggtgtttcatccatgctcattgcatcgtaagcc |
47249720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 47242938 - 47242893
Alignment:
| Q |
308 |
aagcttcaattgctgggtgtttcatccatgtacattgcatcgtaag |
353 |
Q |
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| T |
47242938 |
aagcttcagttgcttggtgtttcatccatgctcattgcatcgtaag |
47242893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 47254195 - 47254150
Alignment:
| Q |
308 |
aagcttcaattgctgggtgtttcatccatgtacattgcatcgtaag |
353 |
Q |
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| T |
47254195 |
aagcttcaattgcttggtgtttcatccatgctcatcgcatcgtaag |
47254150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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