View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14231_high_11 (Length: 527)
Name: NF14231_high_11
Description: NF14231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14231_high_11 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 469; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 16 - 512
Target Start/End: Complemental strand, 36627601 - 36627105
Alignment:
| Q |
16 |
attggtgatgcttcaaccattttcaaattcatgaatgattgggccattatcaaccaaaagatagaggaagataaaaaagagttattagtatcacccttga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36627601 |
attggtgatgcttcaaccattttcaaattcatgaatgattgggccattatcaaccaaaagatagaggaagataaaaaagagttattagtatcacccttga |
36627502 |
T |
|
| Q |
116 |
gtttacttgatgcaggggcaacaatttttccacaaagggatttgcctatcttccgagaaatggtgataaagaaagaaaacaatgtcgtatttaaaaggtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36627501 |
gtttacttgatgcaggggcaacaatttttccacaaagggatttgcctatcttcccagaaatggtgataaagaaagaaaacaatgtcgtatttaaaaggtt |
36627402 |
T |
|
| Q |
216 |
tgtttttcaacctgcaatgattaagtctcttaaggcaatggtgacttctagttccatgcattctcccacgcgagtacaagttgtaactgcatggatttac |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36627401 |
tgtttttcaacctgcaatgattaagtctcttaaggcaatggtgacttctagttccatgcattctcccacgcaagtacaagttgtaactgcatggatttac |
36627302 |
T |
|
| Q |
316 |
aagcatgccgtttcaataatggggttaaatttccagacggcaatgtttagcatgattgtcgatcttcgtagaagaatggatcctccattgtctgaacaat |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
36627301 |
aagcatgccgtttcaataatggggttaaatttccagacggcaatgtttagcatgattgtcgatcttcgtagaagaatggttcctccattgtctgaacatt |
36627202 |
T |
|
| Q |
416 |
gtgtaggcaacatattttggttttcgtctatgttggcaaataagaaggaaatggaactagaagatttagtctgccaaataaaagaagggttatctga |
512 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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|
| T |
36627201 |
gtgtagggaacatattttggttttcgtctatgttggcaaataagaaggaaatggaactagaagatttggtctgccagataaaagaagggttatctga |
36627105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 512
Target Start/End: Complemental strand, 36633168 - 36632677
Alignment:
| Q |
16 |
attggtgatgcttcaaccattttcaaattcatgaatgattgggccattatcaaccaaaagatagaggaagataaaaaagagttattagtatcacccttga |
115 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||| | |
|
|
| T |
36633168 |
attggtgatgcttcaaccgttttcaacttcatgaatgattgggccactatcaaccaaac-----aggaagatggaaaagagttattagtatcacccttaa |
36633074 |
T |
|
| Q |
116 |
gtttacttgatgcaggggcaacaatttttccacaaagggatttgcctatcttccgagaaatggtgataaagaaagaaaacaatgtcgtatttaaaaggtt |
215 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||| | |||| ||| || | | ||||| ||||||||||||||||||||||||||| |
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|
| T |
36633073 |
gtttacttgatgcaggagcaataatttttccacaaagggatttgcctgttttcccagagattgcgggaaagagagaaaacaatgtcgtatttaaaaggtt |
36632974 |
T |
|
| Q |
216 |
tgtttttcaacctgcaatgattaagtctcttaaggcaatggtgacttctagttccatgcattctcccacgcgagtacaagttgtaactgcatggatttac |
315 |
Q |
| |
|
| ||||||||||||||||||| || ||||||||||||||||| |||||||||| ||||||||||||||| | ||||||||||||||||||||||||||| |
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|
| T |
36632973 |
tttttttcaacctgcaatgatcaaatctcttaaggcaatggtaacttctagtttcatgcattctcccacacatgtacaagttgtaactgcatggatttac |
36632874 |
T |
|
| Q |
316 |
aagcatgccgtttcaataatggggttaaatttccagacggcaatgtttagcatgattgtcgatcttcgtagaagaatggatcctccattgtctgaacaat |
415 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||| ||||| |||| ||||| ||| ||||| | | ||||||||||||||||||||| ||| ||| |
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|
| T |
36632873 |
aagcatacagtttcaataatggggttaaatttccaaacggcgtcgttttgcatggctgtaaatcttagaaaaagaatggatcctccattgtcggaaaaat |
36632774 |
T |
|
| Q |
416 |
gtgtaggcaacatattttggttttcgtctatgttggcaaataagaaggaaatggaactagaagatttagtctgccaaataaaagaagggttatctga |
512 |
Q |
| |
|
||| ||| |||||| |||| ||||| ||||||||||||||||||||||||||| ||||| || || |||||| |||||||||||||||||||||| |
|
|
| T |
36632773 |
gtgcagggaacatagtttgcaattcgtatatgttggcaaataagaaggaaatggagctagatgagttggtctgcaaaataaaagaagggttatctga |
36632677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 16 - 512
Target Start/End: Complemental strand, 36622364 - 36621877
Alignment:
| Q |
16 |
attggtgatgcttcaaccattttcaaattcatgaatgattgggccattatcaaccaaaagatagaggaagataaaaaagagttattagtatcacccttga |
115 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||| | || |||||| ||||||| |||||| | |
|
|
| T |
36622364 |
attggtgatgctgcaaccattttcaacttcatgaatgattgggccattatctaccaaaagtttgatgaagatgaaaaagatttatta------------a |
36622277 |
T |
|
| Q |
116 |
gtttacttgatgcaggggcaacaatttttccacaaagggatttgcctatcttccgagaaatggtgataaagaaagaaaacaatgtcgtatttaaaaggtt |
215 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||| |||| ||||| ||| |||||| |||||||||||| | ||||||||||| |
|
|
| T |
36622276 |
gtttacttgatgcaggggggacaatttttccacaaagggatttacctattttcccagaaaatgtgttaaagagagaaaacaatgttgagtttaaaaggtt |
36622177 |
T |
|
| Q |
216 |
tgtttttcaacctgcaatgattaagtctcttaaggcaatggtgacttctagttccatgcattctcccacgcgagtacaagttgtaactgcatggatttac |
315 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| ||||||||| || || |||||||||| ||||||||||||| |
|
|
| T |
36622176 |
tgtttttcaacctgcgatgatcaagtctcttaaggcaatggtaacttctagttccatgccttctcccacacgcgtgcaagttgtaattgcatggatttac |
36622077 |
T |
|
| Q |
316 |
aagcatgccgtttcaataatggggttaaatttccagacggcaatgtttagcatgattgtcgatcttcgtagaagaatggatcctccattgtctgaacaat |
415 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||| |||| |||| |||| |||| || | |||||||| |||||| ||||||||| ||| |
|
|
| T |
36622076 |
aagcatgctgtatcaataatggggttaaatttccagacggcttcgttttacatggttgtgaatctacgcaaaagaatggttcctccgttgtctgaaaaat |
36621977 |
T |
|
| Q |
416 |
gtgtaggcaacatattttggttttcgtct---atgttggcaaataagaaggaaatggaactagaagatttagtctgccaaataaaagaagggttatctga |
512 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||| || ||||||||||||||||| |||||||||| || || ||| |||||||||||||||||||||| |
|
|
| T |
36621976 |
gtgtagggaacatactttggttttcgtctatgatgatgacaaataagaaggaaatgaaactagaagagttggtatgcaaaataaaagaagggttatctga |
36621877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 3e-74; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 16 - 509
Target Start/End: Original strand, 34320449 - 34320951
Alignment:
| Q |
16 |
attggtgatgcttcaaccattttcaaattcatgaatgattgggccattatcaaccaaaagatagaggaagataaaaaaga------gttattagtatcac |
109 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||| |||| ||||||||||| || | ||||| || |||| ||||||||||| || |
|
|
| T |
34320449 |
attggtgatgcgtcaaccattttcaacttcatgaatgattggtccatcatcaaccaaaaattacaagaagaagaagaagataaagggttattagtattac |
34320548 |
T |
|
| Q |
110 |
ccttgagtttacttgatgcaggggcaacaatttttccacaaagggatttgcctatcttccgagaaatggtgataaagaaagaaaacaatgtcgtatttaa |
209 |
Q |
| |
|
| || ||||||||||| ||| || | ||||||||||||||||||| |||| |||| |||| | ||| ||| || | |||||||||| || | ||| |
|
|
| T |
34320549 |
cttttcctttacttgatggaggagcttctgtttttccacaaagggatttaactattttcccagaacttgtgttaacgagaaaaaacaatgtggtgtgtaa |
34320648 |
T |
|
| Q |
210 |
aaggtttgtttttcaacctgcaatgattaagtctcttaaggcaatggtgacttctagttccatgcattc---tcccacgcgagtacaagttgtaactgca |
306 |
Q |
| |
|
||||||||| |||||||| ||||||| ||||| ||||||||||||| ||||||||||| |||||||| ||| | || ||||||| ||||||||| |
|
|
| T |
34320649 |
aaggtttgtgtttcaaccctcaatgatcaagtcccttaaggcaatggcaacttctagttctatgcattcacctccatcacgtgtacaagcagtaactgca |
34320748 |
T |
|
| Q |
307 |
tggatttacaagcatgccgtttcaataatggggttaaatttccagacggcaatgtttagcatgattgtcgatcttcgtagaagaatggatcctccattgt |
406 |
Q |
| |
|
|||||||| |||| ||| |||||| ||||||| ||||||||||||||||| | ||||||||| ||| |||||||| | |||||||| |||| |||||| |
|
|
| T |
34320749 |
tggatttataagcgtgcagtttcactaatgggattaaatttccagacggctttatttagcatgggtgtagatcttcgcaaaagaatggttcctgcattgt |
34320848 |
T |
|
| Q |
407 |
ctgaacaatgtgtaggcaacatattttggttttcgtctatgttggcaaataagaaggaaatggaactagaagatttagtctgccaaataaaagaagggtt |
506 |
Q |
| |
|
||||| | |||||||| ||||| ||||||| ||||||||| | ||| ||||||||||||||||| || | || || || | | |||||||||||||||| |
|
|
| T |
34320849 |
ctgaaaagtgtgtaggaaacattgtttggttctcgtctatggttgcagataagaaggaaatggaattacatgagttggtatccaaaataaaagaagggtt |
34320948 |
T |
|
| Q |
507 |
atc |
509 |
Q |
| |
|
||| |
|
|
| T |
34320949 |
atc |
34320951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 89 - 512
Target Start/End: Original strand, 34329439 - 34329862
Alignment:
| Q |
89 |
aaaaagagttattagtatcacccttgagtttacttgatgcaggggcaacaatttttccacaaagggatttgcctatcttccgagaaatggtgataaagaa |
188 |
Q |
| |
|
|||||| |||||||| || |||||| ||| ||||||| ||| || |||| ||||||||||| ||||| ||||| || | |||| | || | |||| |
|
|
| T |
34329439 |
aaaaagggttattagaattaccctttcatttccttgatggaggagcttcaatgtttccacaaagagatttacctatttttcaagaacttgttcttaagag |
34329538 |
T |
|
| Q |
189 |
agaaaacaatgtcgtatttaaaaggtttgtttttcaacctgcaatgattaagtctcttaaggcaatggtgacttctagttccatgcattctcccacgcga |
288 |
Q |
| |
|
|||||||||||| || | |||||| ||||| |||||||| ||||||| ||||| |||||| ||||| ||||||||||| ||||||||||||| || |
|
|
| T |
34329539 |
agaaaacaatgtggtgtgtaaaagatttgtgtttcaaccctcaatgatcaagtcccttaagaaaatggcaacttctagttcggtgcattctcccacacgt |
34329638 |
T |
|
| Q |
289 |
gtacaagttgtaactgcatggatttacaagcatgccgtttcaataatggggttaaatttccagacggcaatgtttagcatgattgtcgatcttcgtagaa |
388 |
Q |
| |
|
||||||||||| ||||||||||||||||| | |||||||||| ||| ||||||||| |||| || ||||||| ||| ||| ||| |||| | || |
|
|
| T |
34329639 |
gtacaagttgtgactgcatggatttacaaatgcacggtttcaataacgggattaaatttcaagacatcattgtttagtatggctgttgattttcgcaaaa |
34329738 |
T |
|
| Q |
389 |
gaatggatcctccattgtctgaacaatgtgtaggcaacatattttggttttcgtctatgttggcaaataagaaggaaatggaactagaagatttagtctg |
488 |
Q |
| |
|
|||||| |||||| ||||||||| |||||||||| |||||||||||||| ||||||||||| ||| |||||||||||||||||||| | ||||| || || |
|
|
| T |
34329739 |
gaatggttcctccgttgtctgaaaaatgtgtagggaacatattttggttctcgtctatgtttgcagataagaaggaaatggaactaaaggatttggtatg |
34329838 |
T |
|
| Q |
489 |
ccaaataaaagaagggttatctga |
512 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
34329839 |
caaaataaaagaagggttatctga |
34329862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 376 - 410
Target Start/End: Original strand, 34333826 - 34333860
Alignment:
| Q |
376 |
gatcttcgtagaagaatggatcctccattgtctga |
410 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34333826 |
gatcttcgtagaagaatggttcctccattgtctga |
34333860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 207 - 348
Target Start/End: Complemental strand, 45306796 - 45306655
Alignment:
| Q |
207 |
taaaaggtttgtttttcaacctgcaatgattaagtctcttaaggcaatggtgacttctagttccatgcattctcccacgcgagtacaagttgtaactgca |
306 |
Q |
| |
|
||||||||||| |||||||| | |||||||| | || || | |||||| ||||| |||| ||| |||||||||| || |||| ||||||||||||| |
|
|
| T |
45306796 |
taaaaggtttgaatttcaaccctcgatgattaaattcctcaaagaaatggtaacttcaagttttatgtattctcccacacgcgtactagttgtaactgca |
45306697 |
T |
|
| Q |
307 |
tggatttacaagcatgccgtttcaataatggggttaaatttc |
348 |
Q |
| |
|
||||| |||||||||| |||||| ||| || ||||||||| |
|
|
| T |
45306696 |
tggatgcacaagcatgcggtttcagcaattggattaaatttc |
45306655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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