View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14231_high_15 (Length: 487)
Name: NF14231_high_15
Description: NF14231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14231_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 25338206 - 25338676
Alignment:
| Q |
1 |
aggagattgtaaatacaacatggattgatgacaggtttgattttgactcagaagaatgcaacattgccaatggaaaatgggttttcaaccaatcaataaa |
100 |
Q |
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| T |
25338206 |
aggagattgtaaatacaacatggattgatgacaggtttgattttgactcagaagaatgcaacattgccaatggaaaatgggtttttaaccaatcaataaa |
25338305 |
T |
|
| Q |
101 |
gccaatctacactgacataacttgtccatatatagaaagacaattttcttgtataaaaaatggtagaacagattctgattatcaacattgggagtggcag |
200 |
Q |
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| T |
25338306 |
gccaatctacactgacataacttgtccatatatagaaagacaattttcttgtataaaaaatggtagaacagattctgattatcaacattgggagtggcag |
25338405 |
T |
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| Q |
201 |
ccagaagattgcaccttgccaaggtaatttccacactccaaagtccaaacatgttaattgtgatttcaagattttcaccttttgacattataaatataga |
300 |
Q |
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| T |
25338406 |
ccagaagattgcaccttgccaaggtaatttccacactccaaagtccaaacatgttaattgtgatttcaaaattttcaccttttgacattataaatataga |
25338505 |
T |
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| Q |
301 |
tatcatatgtttgtttagcttatgtaagtgtattaaacaatgaatacattcttttgtagtttcaatccagtgttagctctcaaaaaacttcaagggaaaa |
400 |
Q |
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| T |
25338506 |
tatcatatgtttgtttagcttatgttagtgtattaaacaatgaatacattcttttgtagtttcaatccagtgttagctctcaaaaaacttcaagggaaaa |
25338605 |
T |
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| Q |
401 |
gactactatttgtaggggattcacttcaaagaaatcaatgggaatcttttgtatgtttggtagaatggatc |
471 |
Q |
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| T |
25338606 |
gactactatttgtaggggattcacttcaaagaaatcaatgggaatcttttgtatgtttggtagaatggatc |
25338676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 5230463 - 5230665
Alignment:
| Q |
19 |
catggattgatgacaggtttgattttgactcagaagaatgcaacattgccaatggaaaatgggttttcaaccaatcaataaagccaatctacactgacat |
118 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||| |||| |||||||||||| | || ||| ||||||||||| | ||| | || | |
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| T |
5230463 |
catggattgatgataggtttgattttgatccagaagaatgcaatgttgctaatggaaaatggatatttaacagttcaataaagcctttatactcagataa |
5230562 |
T |
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| Q |
119 |
aacttgtccatatatagaaagacaattttcttgtataaaaaatggtagaacagattctgattatcaacattgggagtggcagccagaagattgcaccttg |
218 |
Q |
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| T |
5230563 |
aagctgtccatacatagataaacaattttcttgtgtcaagaatggaaggaatgattctgattatcttcattgggagtggcagccagaagattgtaccttg |
5230662 |
T |
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| Q |
219 |
cca |
221 |
Q |
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||| |
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| T |
5230663 |
cca |
5230665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 461
Target Start/End: Original strand, 5230934 - 5231031
Alignment:
| Q |
364 |
aatccagtgttagctctcaaaaaacttcaagggaaaagactactatttgtaggggattcacttcaaagaaatcaatgggaatcttttgtatgtttggt |
461 |
Q |
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||||||| | |||| |||||||| ||| |||| || || | ||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||| |
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| T |
5230934 |
aatccagagatagccctcaaaaagcttgaaggaaagaggttgctatttgtaggagattcacttcaaagaaaccaatgggaatcatttgtttgtttggt |
5231031 |
T |
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