View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14231_high_2 (Length: 639)
Name: NF14231_high_2
Description: NF14231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14231_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 13 - 624
Target Start/End: Original strand, 5852603 - 5853221
Alignment:
| Q |
13 |
aatatcttatatatttatatattagtagaaaaatcgggtcaaagcatggtatgtgatggtgaacagtacacattttcaatataggacatttaaaatgata |
112 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||| | |
|
|
| T |
5852603 |
aatatcttatatctttatatattagtagaaaaatcgggtcaaagcatggtatgtgattgtgaacagtacacattttcaatatgggtcatttaaaatgaca |
5852702 |
T |
|
| Q |
113 |
tggagtgagtaatttcctttctctaaactgatattttgaatcaattaagtctatgcttcttgacatttatatatttgacagcattcctttttccatcatc |
212 |
Q |
| |
|
| |||||||| |||| ||||||||||| ||||||||||||||||||||| |||||||||||||||| | ||||||| ||||||||| |||||||||||| |
|
|
| T |
5852703 |
ttgagtgagtgattttctttctctaaattgatattttgaatcaattaag--tatgcttcttgacattcacatatttggcagcattcccttttccatcatc |
5852800 |
T |
|
| Q |
213 |
catgttacacgcaaagctagaagtcttggtcaacatgccaagtttttaggttgagtagactagattatgcaccacaaacttgttga-ttttgtttgaaaa |
311 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||| |||||||| |
|
|
| T |
5852801 |
catgttacacggaaagctagaagtcttggtcaacatgccaa--ctttaagttgagtagactagattatgcaccataaacttgttgatttttttttgaaaa |
5852898 |
T |
|
| Q |
312 |
attgcatcaattagcacgcaaacgggaagacttagacacctaagccatgtcaattgaatatggaatttgatataatgaaaatgattaggacaaaacaa-- |
409 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5852899 |
attgcatcaattagcacgcaaacaggacgacttagacgactaagccatgtcaattgaatatggaatttgatataatgaaaatgattaggacaaaacaaac |
5852998 |
T |
|
| Q |
410 |
--------acaaacacaatggagaaccatactaaggtgtcaatgctaattgtttgcactttcttattttgctccatgcccactttatctaaacagaacac |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5852999 |
aaaccaacacaaacacaatggagaaccatactaaggtgccaatgctaattgtttgcacttttttattttgctccatgcccactttatctaaacagaacac |
5853098 |
T |
|
| Q |
502 |
ttttactactattgctccaaatcagtttatgcaattcggtgatacacttgtttctggagctggaaggtttgaagcaggatttttcaactttggagattca |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||| |||||||||||||||||||||||| |||||| |
|
|
| T |
5853099 |
ttttactactattgctccaaatcagtttatgcaattcggtgatactcttgtttctgcagctgagaggtatgaagcaggatttttcaactttggcgattca |
5853198 |
T |
|
| Q |
602 |
cagcgccaatactttggcatatg |
624 |
Q |
| |
|
|| ||||||||||| || ||||| |
|
|
| T |
5853199 |
caacgccaatacttcggtatatg |
5853221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 351 - 624
Target Start/End: Original strand, 5847642 - 5847914
Alignment:
| Q |
351 |
ctaagccatgtcaattgaatatggaatttgatataatgaaaatgattaggacaaaacaaacaaacacaatggagaaccatactaaggtgtcaatgctaat |
450 |
Q |
| |
|
||||||||||||| |||||| | ||||||||| |||||||||||| |||||||| |||||||||||||||| ||||||| |||| || ||||||||| |
|
|
| T |
5847642 |
ctaagccatgtcatttgaattttaaatttgataaaatgaaaatgatgaggacaaat-aaacaaacacaatggaaaaccataataagatgctaatgctaat |
5847740 |
T |
|
| Q |
451 |
tgtttgcactttcttattttgctccatgcccactttatctaaacagaacacttttactactattgctccaaatcagtttatgcaattcggtgatacactt |
550 |
Q |
| |
|
|| | ||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5847741 |
ggtgtctactttctccttttgcttaatgcccactttctctaaacagaacacttttactactattgccccaaatcagtttatgcaattcggtgatacactt |
5847840 |
T |
|
| Q |
551 |
gtttctggagctggaaggtttgaagcaggatttttcaactttggagattcacagcgccaatactttggcatatg |
624 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| || ||||| |
|
|
| T |
5847841 |
gtttctggaactggaaggtttgaagcaggatttttctactttggagatccacaacgccaatacttcggtatatg |
5847914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 458 - 624
Target Start/End: Complemental strand, 5485996 - 5485830
Alignment:
| Q |
458 |
actttcttattttgctccatgcccactttatctaaacagaacacttttactactattgctccaaatcagtttatgcaattcggtgatacacttgtttctg |
557 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||| |||| |
|
|
| T |
5485996 |
actttcttattttgctccatgcccactttgtctacacagaacacttttactgctattgctccaaatcaatttatgcaattcggtgatacgcttgtctctg |
5485897 |
T |
|
| Q |
558 |
gagctggaaggtttgaagcaggatttttcaactttggagattcacagcgccaatactttggcatatg |
624 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| | |||||||| || ||||| |
|
|
| T |
5485896 |
cagctggaaggtttgaagcaggatttttcaactttggcgattcacaacatcaatacttcggtatatg |
5485830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 385 - 624
Target Start/End: Original strand, 5801277 - 5801517
Alignment:
| Q |
385 |
aatgaaaatgattaggacaaaacaa-acaaacacaatggagaaccatactaaggtgtcaatgctaattgtttgcactttcttattttgctccatgcccac |
483 |
Q |
| |
|
|||||||||||| || ||||| ||| |||||||||||||||||| ||| |||| | ||||||||| || | ||||||| ||||||||||||||||| |
|
|
| T |
5801277 |
aatgaaaatgatgagaacaaaccaacacaaacacaatggagaacaataacaaggggctaatgctaatggtgttttctttcttcttttgctccatgcccac |
5801376 |
T |
|
| Q |
484 |
tttatctaaacagaacacttttactactattgctccaaatcagtttatgcaattcggtgatacacttgtttctggagctggaaggtttgaagcaggattt |
583 |
Q |
| |
|
||| |||| ||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||| || |||||| |||||| |
|
|
| T |
5801377 |
tttctctagacaaaactattttactactattgctccaaatcagtttatgcaatacggtgatactcttgtttctgcagctggaatgtatgaagccggattt |
5801476 |
T |
|
| Q |
584 |
ttcaactttggagattcacagcgccaatactttggcatatg |
624 |
Q |
| |
|
||||||||||| ||||| || ||||||||||| || ||||| |
|
|
| T |
5801477 |
ttcaactttggcgattcccaacgccaatacttcggtatatg |
5801517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 364 - 624
Target Start/End: Complemental strand, 20344943 - 20344676
Alignment:
| Q |
364 |
attgaatatggaatttgatataatgaaaatgattaggacaaaacaa-acaaacacaatggagaaccatactaaggtgtcaatgctaattgtttgcacttt |
462 |
Q |
| |
|
||||||| |||||||||||| ||||||||| | |||||||| | | |||||||||||||||||||||| ||||||| ||||||||| || | ||||| |
|
|
| T |
20344943 |
attgaatttggaatttgataaaatgaaaataacgaggacaaatcgacacaaacacaatggagaaccataataaggtgctaatgctaatggtgtttacttt |
20344844 |
T |
|
| Q |
463 |
cttattttgct------ccatgcccactttatctaaacagaacacttttactactattgctccaaatcagtttatgcaattcggtgatacacttgtttct |
556 |
Q |
| |
|
||| ||||||| |||||||||||| |||||||| || ||| ||||||| |||||| |||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
20344843 |
cttcttttgcttcatggccatgcccacttactctaaacataaaactcttactaccattgcttcaaatcagtttatgcaatacagtgatacacttgtttct |
20344744 |
T |
|
| Q |
557 |
ggagctggaaggtttgaagcaggatttttcaactttggagattcacagcgccaatactttggcatatg |
624 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||| ||||| ||| ||||||||||| || ||||| |
|
|
| T |
20344743 |
ggagatggattgtttgaagcaggatttttcaactttagagatccactacgccaatacttcggtatatg |
20344676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 460 - 624
Target Start/End: Complemental strand, 5527053 - 5526889
Alignment:
| Q |
460 |
tttcttattttgctccatgcccactttatctaaacagaacacttttactactattgctccaaatcagtttatgcaattcggtgatacacttgtttctgga |
559 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| | |
|
|
| T |
5527053 |
tttcttcttttgctccatgcccaatttatctacacagaaaacttttactactattgctccaaatcagtttatgcaatttggtgatactcttgtttctgca |
5526954 |
T |
|
| Q |
560 |
gctggaaggtttgaagcaggatttttcaactttggagattcacagcgccaatactttggcatatg |
624 |
Q |
| |
|
||||| | || ||||||||| |||||||||||||||||| |||| | |||||||| || ||||| |
|
|
| T |
5526953 |
gctgggatgtatgaagcaggttttttcaactttggagatccacaacatcaatacttcggtatatg |
5526889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 461 - 624
Target Start/End: Complemental strand, 5491414 - 5491251
Alignment:
| Q |
461 |
ttcttattttgctccatgcccactttatctaaacagaacacttttactactattgctccaaatcagtttatgcaattcggtgatacacttgtttctggag |
560 |
Q |
| |
|
||||| |||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| || |
|
|
| T |
5491414 |
ttcttcttttcctccatgctaactttctctacacagaaaacttttactactattgctccaaatcagtttatgcaatacggtgatactcttgtttctgcag |
5491315 |
T |
|
| Q |
561 |
ctggaaggtttgaagcaggatttttcaactttggagattcacagcgccaatactttggcatatg |
624 |
Q |
| |
|
||| |||| |||||||||||||||||||||||| |||||||| ||||||||||| || ||||| |
|
|
| T |
5491314 |
ctgagaggtatgaagcaggatttttcaactttggcgattcacaacgccaatacttcggtatatg |
5491251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 460 - 624
Target Start/End: Complemental strand, 5504210 - 5504046
Alignment:
| Q |
460 |
tttcttattttgctccatgcccactttatctaaacagaacacttttactactattgctccaaatcagtttatgcaattcggtgatacacttgtttctgga |
559 |
Q |
| |
|
|||||| |||||||||||||||| ||| |||| ||||| || ||||||||||| ||||||||||| |||||||||| ||||||||| |||||||||| | |
|
|
| T |
5504210 |
tttcttcttttgctccatgcccaatttctctacgcagaaaacctttactactatagctccaaatcaatttatgcaatacggtgatactcttgtttctgca |
5504111 |
T |
|
| Q |
560 |
gctggaaggtttgaagcaggatttttcaactttggagattcacagcgccaatactttggcatatg |
624 |
Q |
| |
|
||||||| || |||||||||||||||||||||||| |||||||| ||||||||||| || ||||| |
|
|
| T |
5504110 |
gctggaatgtatgaagcaggatttttcaactttggtgattcacaacgccaatacttcggtatatg |
5504046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 316 - 624
Target Start/End: Original strand, 5826874 - 5827176
Alignment:
| Q |
316 |
catcaattagcacgcaaacgggaagacttagacacctaagccatgtcaattgaatatggaatttgatataatgaaaatgattaggacaaaa------caa |
409 |
Q |
| |
|
|||||||||||||||| | ||||| |||| ||| |||| ||| ||| |||||| |||||||||||| ||||||||| || | ||||||| ||| |
|
|
| T |
5826874 |
catcaattagcacgcacatgggaatacttggac---taagtcatctcagttgaatttggaatttgataaaatgaaaattatgatgacaaaataaacacaa |
5826970 |
T |
|
| Q |
410 |
acaaacacaatggagaaccatactaaggtgtcaatgctaattgtttgcactttcttattttgctccatgcccactttatctaaacagaacacttttacta |
509 |
Q |
| |
|
|||||||||||| | || |||| ||||||| ||| ||||| || || ||||||||| |||||| || ||||||||||||||||||||||||| ||||| |
|
|
| T |
5826971 |
acaaacacaatgaaaaagcataataaggtgctaattctaatggtgtgtactttcttactttgcttcaagcccactttatctaaacagaacactcttact- |
5827069 |
T |
|
| Q |
510 |
ctattgctccaaatcagtttatgcaattcggtgatacacttgtttctggagctggaaggtttgaagcaggatttttcaactttggagattcacagcgcca |
609 |
Q |
| |
|
||||||||||||||||||| ||| || ||||||||| |||||||| || |||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
5827070 |
--------ccaaatcagtttatgcaatatcatgaaacccttgtttcttcagctggaatgtatgaagcaggatttttcaactttggcgattcacagcgtca |
5827161 |
T |
|
| Q |
610 |
atactttggcatatg |
624 |
Q |
| |
|
|||||| || ||||| |
|
|
| T |
5827162 |
atacttcggtatatg |
5827176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 264 - 624
Target Start/End: Complemental strand, 5456406 - 5456065
Alignment:
| Q |
264 |
tgagtagactagattatgcaccacaaacttgttgattttgtttgaaaaattgcatcaattagcacgcaaacgggaagacttagacacctaagccatgtca |
363 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||| || ||||| ||||||||| ||||| |||| |||| ||| |||| | | ||| |
|
|
| T |
5456406 |
tgagtaggctagattatacaccacaaacttgttgattttgtttggaat-ttgcaacaattagcatgcaaataggaatacttggac---taagtcttctca |
5456311 |
T |
|
| Q |
364 |
attgaatatggaatttgatataatgaaaatgattaggacaaaa-caaacaaacacaatggagaaccatactaaggtgtcaatgctaattgtttgcacttt |
462 |
Q |
| |
|
|| ||||||| ||| || ||||||||| | |||||| | ||||||||||||||||| |||| |||| || ||||||||| || || ||||| |
|
|
| T |
5456310 |
at-------ggaatttcataaaaggaaaatgatgaagacaaactcccacaaacacaatggagaagcataataagctgataatgctaatggtgtgtacttt |
5456218 |
T |
|
| Q |
463 |
cttattttgctccatgcccactttatctaaacagaacacttttactactattgctccaaatcagtttatgcaattcggtgatacacttgtttctggagct |
562 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| ||||||| ||| | ||||||| |||||| |||| ||| || |||||||||| ||| |
|
|
| T |
5456217 |
cttattttgcttcatgcccactttctctaaactgaacactctta---------caccaaatctgtttatccaatataatgaaacccttgtttctgctgct |
5456127 |
T |
|
| Q |
563 |
ggaaggtttgaagcaggatttttcaactttggagattcacagcgccaatactttggcatatg |
624 |
Q |
| |
|
|||| ||||||||||| |||||||| ||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
5456126 |
ggaacctttgaagcaggttttttcaattttggagatccacaacgccaatactttggtatatg |
5456065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 418 - 624
Target Start/End: Complemental strand, 5447700 - 5447503
Alignment:
| Q |
418 |
aatggagaaccatactaaggtgtcaatgctaattgtttgcactttcttattttgctccatgcccactttatctaaacagaacacttttactactattgct |
517 |
Q |
| |
|
|||| ||||||||| || |||| ||||||||| || || ||||||||||||| |||||||||| |||||||||||| ||| ||| ||||| |
|
|
| T |
5447700 |
aatgcagaaccataatatggtgctaatgctaatagtgtgtactttcttattttcctccatgcccgctttatctaaactgaaaactcttact--------- |
5447610 |
T |
|
| Q |
518 |
ccaaatcagtttatgcaattcggtgatacacttgtttctggagctggaaggtttgaagcaggatttttcaactttggagattcacagcgccaatactttg |
617 |
Q |
| |
|
|||||||||| ||| |||| ||| || |||||||||| ||||| |||||||||||||||||||| ||||||||| |||| ||||||||||||| |
|
|
| T |
5447609 |
ccaaatcagtatatccaatataatgaaacccttgtttctgctattggaacctttgaagcaggatttttcaattttggagatccacaacgccaatactttg |
5447510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 5447867 - 5447802
Alignment:
| Q |
240 |
ggtcaacatgccaagtttttaggttgagtagactagattatgcaccacaaacttgttgattttgttt |
306 |
Q |
| |
|
||||||||||||||| ||| |||| || ||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5447867 |
ggtcaacatgccaagatttaaggt-gattaggctagattatacaccacaaacttgttgattttgttt |
5447802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University