View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14231_high_20 (Length: 419)
Name: NF14231_high_20
Description: NF14231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14231_high_20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 43 - 419
Target Start/End: Complemental strand, 2813746 - 2813365
Alignment:
| Q |
43 |
agatattgagatttgaagagcttcatctttagctcaatggtattaaaaaccgcaccactct-----ctatatattcaccaatccatatggaaaaagctat |
137 |
Q |
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| T |
2813746 |
agatattgagatttgaagagcttcatctttagctcaatggtattaaaaaccacaccactctactctctatatattcaccaatccatatggaaaaagttat |
2813647 |
T |
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| Q |
138 |
caaaattttcggatccattcatccgaatataagaaaaaacaatattttctcaatgtcaatccattcaggagatactctcatagcacttggagttggatat |
237 |
Q |
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| T |
2813646 |
caaaattttcggatccattcatccgaatataagaaaaaacaatattttctcaatgtcaatccattcaggagatactctcatagcacttggagttggatat |
2813547 |
T |
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| Q |
238 |
gaagttttagagctacttttatcctactcatttcaccacacgtgatgaatgtccagataattaatatcccacaattaattactatcccaagtctaagcaa |
337 |
Q |
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| T |
2813546 |
gaagttttagagctacttttatcctactcatttcaccacacgtgatgaatgtccagatgattaatatcccacaataaattactatcccaagtctaagcaa |
2813447 |
T |
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| Q |
338 |
ttgggaacagaagcaaagtgttttgatctagaaaaggtgggaagggaaaaattaggaacacagagaaattgctgcagaaaaa |
419 |
Q |
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| T |
2813446 |
ttgggaacagaagcaaagtgttttgatctagaaaaggtgggaagggaaaaattaggatcacaaagaaattgctgcagaaaaa |
2813365 |
T |
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