View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14231_high_22 (Length: 375)
Name: NF14231_high_22
Description: NF14231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14231_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 25625532 - 25625908
Alignment:
| Q |
1 |
ttatgagcaattaagatccatagataagatgattcttacatttactgaatgagtctaccacagtagacacagtaccttaatatagacaccagatagttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25625532 |
ttatgagcaattaagatccatagataagatgattcttacatttactgaatgagtctaccacagtagacacagtaccttaata--gacaccagatagttct |
25625629 |
T |
|
| Q |
101 |
aaactataccaacattgtatagctactaatttagttgaagatttcattacaggttataaaattcaaaagatgattgaacaccaaatctatataaacatgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25625630 |
aaactataccaacattgtatagctactaatttagttgaagatttcattacaggttataaaattcaaaagataattgaacaccaaatctatataaacatgg |
25625729 |
T |
|
| Q |
201 |
cctagcataaaatacactacagtacacattattgagt-----------tgcaagcacctggccagnnnnnnnnaatgagtagaaatcgaacttggtactc |
289 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25625730 |
cctagcataaaatacactacagtacacattattgagttgcataaaaagtgcaagcacctggccagttttttttaatgagtagaaatcgaacttggtactc |
25625829 |
T |
|
| Q |
290 |
cagagtttacaacactcgcatacacttacgcagggtttacttggccggcttgaaaccttcattaaccacagtataatct |
368 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25625830 |
cagagtttacaacactcgcatacacttacgcagggtttacttggccggcttgaaaccttcattaaccacagtagaatct |
25625908 |
T |
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