View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14231_high_27 (Length: 279)
Name: NF14231_high_27
Description: NF14231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14231_high_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 11687944 - 11688075
Alignment:
| Q |
4 |
gggtagattatactttacagaatcaattgtttaccctcataccaaaattgacccttcaaagtaaaaaattacagcttatcaaaaaataacttcagctgaa |
103 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11687944 |
gggttgattatactttacagaatcaattgtttacactcataccaaaattgacccttcaaagtaaaaaattacagcttatcaaaaaataacttcagctgaa |
11688043 |
T |
|
| Q |
104 |
attcagaaaacgaagcagaagaccaccaattt |
135 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |
|
|
| T |
11688044 |
attcagaaaaagaagcagaagaccaccaattt |
11688075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 11691319 - 11691422
Alignment:
| Q |
33 |
tttaccctcataccaaaattgacccttcaaagtaaaaa-attacagcttatcaaaaaataacttcagctgaaattcagaaaacgaagcagaagaccacca |
131 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||| |||||||| |||||||| ||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
11691319 |
tttaccctcataccaaaactgacccttcaaagtaaaaatattaaagcttatccaaaaataaattcagatgaaattcagaaaaataagcagaagaccacca |
11691418 |
T |
|
| Q |
132 |
attt |
135 |
Q |
| |
|
|||| |
|
|
| T |
11691419 |
attt |
11691422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 275
Target Start/End: Original strand, 11688186 - 11688219
Alignment:
| Q |
242 |
tgttaactttacttgagagatgaaaaacacaaaa |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
11688186 |
tgttaactttacttgagagatgaaaaacacaaaa |
11688219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University