View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14231_high_28 (Length: 272)
Name: NF14231_high_28
Description: NF14231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14231_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 126 - 239
Target Start/End: Complemental strand, 1396209 - 1396096
Alignment:
| Q |
126 |
gaaagtgcattttccttcacaataaacttacttgggacacttcctatatcaataaattaccactaattcctatcgagcgacattcagaattagttgtcga |
225 |
Q |
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| T |
1396209 |
gaaagtgcattttccttcacaataaacttacttgggacacttcctatatcaagaaattaccactaattcctatcgagccacattcagaattagttgtcga |
1396110 |
T |
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| Q |
226 |
acaagtaactcgac |
239 |
Q |
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| T |
1396109 |
acaagtaactcgac |
1396096 |
T |
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Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 1396287 - 1396224
Alignment:
| Q |
17 |
aatattgtctagaaactgagactgtaaactcatttcaactaattaggggcacgaaccattactg |
80 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| |
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| T |
1396287 |
aatattgtctagaaactgagactgtaaactcatctcaactaattagggtcaggaaccattactg |
1396224 |
T |
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