View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14231_high_5 (Length: 579)
Name: NF14231_high_5
Description: NF14231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14231_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 563
Target Start/End: Original strand, 53804644 - 53805212
Alignment:
| Q |
1 |
tgctatctttacttagttgaatgtaacgggagtcttggtatcatcatataggttctctattacccgtgtggaaggtaatggatttgaaaaggcataggag |
100 |
Q |
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| T |
53804644 |
tgctatctttacttagatgaatgtaacgggagtcttggtatcatcatataggttctctattacccgtgtggaaggtaatggatttgaaaaggcatgggag |
53804743 |
T |
|
| Q |
101 |
tgggggatacttttctcttatgaaggaaccaactactattaagcaacaacaacaccttttgacaatcataccaacgaggtaaacagtaatttggagagag |
200 |
Q |
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| T |
53804744 |
tgggagatacttttctcttatgaaggaaccaactactattaagcaacaacaacaccttttgacaatcataccaacgaggtaaacactaatttggagagag |
53804843 |
T |
|
| Q |
201 |
aaataaggatggaaacattgaaattgaatgcgtgggagagggaacaagtaaattgctgctggtgaagaaaaaagatagaaaagtgtcgtgttaggctgat |
300 |
Q |
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| T |
53804844 |
aaataaggatggaaacattgaaattgaatgcgtgggagagggaacaagtaaattgctgctggtgaagaaaaaagatagaaaagtgtcgtgttaggctgat |
53804943 |
T |
|
| Q |
301 |
gaagtcttttcagatggagaaataattacggcaacatgcttaagatgtactagtacataaatactagagtcaaaacaaccaacatatttaaagagggtaa |
400 |
Q |
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| T |
53804944 |
gaagtcttttcggatggagaaataattacggcaacatgcttaagatgtactagtacataaatactagagacaaaacaaccaacatatttaaagagggtaa |
53805043 |
T |
|
| Q |
401 |
aaagagaaaggtaaataaattcttgatccttacaaaatattttgttgtttatcaaatatttttcg--------acctcaactctctccgtaataacattg |
492 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
53805044 |
aaagagaaaggtaaataaattcatgatccttataaaatattttgttgtttatcaaatatttttcgatgatgctacctcaa--ctctccgtaataacattg |
53805141 |
T |
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| Q |
493 |
aagaaatatatcatacgatttatcttataaaataaaatagaaactcaattcaaatggtttgaacatacata |
563 |
Q |
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||||||||||||||| | |||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
53805142 |
aagaaatatatcatatcaattatcttataaaataaaatagaaattcaattcagatggtttgaacatacata |
53805212 |
T |
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