View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14231_high_7 (Length: 556)
Name: NF14231_high_7
Description: NF14231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14231_high_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 19 - 556
Target Start/End: Complemental strand, 55082441 - 55081904
Alignment:
| Q |
19 |
taactgctaaacaaaaatctcaaatgcttgcttcnnnnnnngtcgcaaaacgctgagtgatggtcatcaagaagcttaacaattgtggtggaggtgatga |
118 |
Q |
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| T |
55082441 |
taactgctaaacaaaaatctcaaacgcttgcttcaaaaaaagtcgaaaaacgctgagtgatggtcatcaagaagcttaacaattatagtggaggtgatga |
55082342 |
T |
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| Q |
119 |
tggtggtggcgccggtcatcactgatcctaatcatggcgactctgtattcattccagtactgtgttcaacggaaatcattgtcgaaggttcattgcggtt |
218 |
Q |
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| T |
55082341 |
tggtggtggcgccggtcatcactgatcctaatcatggcgactctgtattcattccagtactgtgttcaacggaaatcattgtcgaaggttcattgcggtt |
55082242 |
T |
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| Q |
219 |
gtgttataatcggtgccctttatctgcctccgatctgcgacatgctgccaccgtagaagtcttgtctgaactgcagaggactgccgctggttttgttatt |
318 |
Q |
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| T |
55082241 |
gtgttataatcggtgccctttatctgcctccgatctgcgacatgatgccaccgtagaagtcttgtctgaactgcagaggactgccgctggttttgttatt |
55082142 |
T |
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| Q |
319 |
gtttagttcatgtcaatatcagtgaaataatttttagatgactcacttccatcccttttgcatttggtcaatcttatgcagtaggaataaatgtcaggag |
418 |
Q |
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| T |
55082141 |
gtttacttcatgtcaatatcagtgaaataatttttagatgactcacttccatcccttttgcatttggtcaatcttatgcagtaggaataaatgtcaggag |
55082042 |
T |
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| Q |
419 |
attctccgattgcccaatagcatgagctcgttatcttcgttatgtattaggtgatttggttttctgtgtgcaaaatttgagactctataatgtattggtt |
518 |
Q |
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| T |
55082041 |
attctccaattgtccaatagcatgagctcgttatcttcgttatgtattaggtgatttggttttctgtgtgcaaaatttgagactctataatgtattggtt |
55081942 |
T |
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| Q |
519 |
cctattagcagaggctaggacaaagatttggttccttg |
556 |
Q |
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| T |
55081941 |
cctattagcagaggctaggacaaagatttggttccttg |
55081904 |
T |
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Back To:
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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 513
Target Start/End: Original strand, 254807 - 254861
Alignment:
| Q |
459 |
tatgtattaggtgatttggttttctgtgtgcaaaatttgagactctataatgtat |
513 |
Q |
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| T |
254807 |
tatgtattaggtgacttggtttccagtgtgcagaatttgaggctctataatgtat |
254861 |
T |
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