View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14231_high_8 (Length: 547)
Name: NF14231_high_8
Description: NF14231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14231_high_8 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 12 - 332
Target Start/End: Original strand, 6517598 - 6517918
Alignment:
| Q |
12 |
gaaaatgagaaggagagaacaaagaaatgaagacattgtataacaaataacaaacaataattatggatgtttcaagctttaaaacgtgaacgagnnnnnn |
111 |
Q |
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| T |
6517598 |
gaaaatgagaaggagagaacaaagaaatgaagacattgtttaacaaataacaaacaataattattgatgtttcaagctttaaaacgtgaacgagtttttt |
6517697 |
T |
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| Q |
112 |
ncattaaaaaataatttggccggctatatattcgtctgttgctagtttttaaaactatttgaaacaaaatttcactttcctttttatagaagaaactaac |
211 |
Q |
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| T |
6517698 |
tcattaaaaaataatttggccggctatatattcgtctgttgctagtttttaaaactatttgaaacaaaatttcactttcctttttatagaagaaactaac |
6517797 |
T |
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| Q |
212 |
ctttcttagatggagaaacatcatataattaatatgcaatttctcatttctcccttaatatgttagttttgctgctagttttcttaggagnnnnnnnntt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6517798 |
ctttcttagatggagaaacatcatataattaatatgcaatttctcatttctcccttaatatgttagttttgctgctagttttcttaggagaaaaaaaatt |
6517897 |
T |
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| Q |
312 |
ggtatacattaagtgtagatc |
332 |
Q |
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| T |
6517898 |
ggtatacattaagtgtagatc |
6517918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 359 - 533
Target Start/End: Original strand, 6517945 - 6518119
Alignment:
| Q |
359 |
cgaactagagatttagtgatattcatcaactgtaannnnnnncttcaagccattatgtttaacaaggaactacattcatcagtcattgattccttaagta |
458 |
Q |
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| T |
6517945 |
cgaactagagatttagtgatattcatcaactgtaatttttttcttcaagccattatgtttaacaaggaactacattcatcagtcattgattccttaagta |
6518044 |
T |
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| Q |
459 |
ctccaatagagctttaagtatgttgaaatgtaattctaaacttgtatatgtttttgttttgtactatgttagttg |
533 |
Q |
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| T |
6518045 |
ctccaatagagctttaagtatgttgaaatctaattctaaacttgtatatgtttttgttttgtactatgttagttg |
6518119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 6521437 - 6521354
Alignment:
| Q |
12 |
gaaaatgagaaggagagaacaaagaaatgaagacattgtataacaaataacaaacaataattatggatgtttcaagctttaaaa |
95 |
Q |
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| T |
6521437 |
gaaaatgagaaggagagaacaaagaaatgaagacattgtataacaaataacaaacaataattatggatgtttcaagctttaaaa |
6521354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 6507303 - 6507381
Alignment:
| Q |
17 |
tgagaaggagagaacaaagaaatgaagacattgtataacaaataacaaacaataattatggatgtttcaagctttaaaa |
95 |
Q |
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| T |
6507303 |
tgagaaggagagaacaaagaaatgaagacattgtataacaaataacacacaacaattatggatgtttcaagctttaaaa |
6507381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 6513203 - 6513282
Alignment:
| Q |
16 |
atgagaaggagagaacaaagaaatgaagacattgtataacaaataacaaacaataattatggatgtttcaagctttaaaa |
95 |
Q |
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| T |
6513203 |
atgagaaggaaagaacaaagaaatgaagacattgtttaagaaataacagacaataattatggatgtttgaagcattaaaa |
6513282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 6513335 - 6513420
Alignment:
| Q |
113 |
cattaaaaaataatttggccggctatatattcgtctgttgctagtttttaaaactatttgaaacaaaatttcactttcctttttata |
199 |
Q |
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| T |
6513335 |
cattgaaaaagaatttggccggctatagattcgactattgctagcttttaaaacta-ttcaaccaaaatttcactttcgtttttata |
6513420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 393
Target Start/End: Original strand, 6518149 - 6518178
Alignment:
| Q |
364 |
tagagatttagtgatattcatcaactgtaa |
393 |
Q |
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| T |
6518149 |
tagagatttagtgatattcatcaactgtaa |
6518178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 71; Significance: 7e-32; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 1328 - 1406
Alignment:
| Q |
17 |
tgagaaggagagaacaaagaaatgaagacattgtataacaaataacaaacaataattatggatgtttcaagctttaaaa |
95 |
Q |
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| T |
1328 |
tgagaaggagagaacaaagaaatgaagacattgtataacaaataacacacaacaattatggatgtttcaagctttaaaa |
1406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 8982 - 9060
Alignment:
| Q |
17 |
tgagaaggagagaacaaagaaatgaagacattgtataacaaataacaaacaataattatggatgtttcaagctttaaaa |
95 |
Q |
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| T |
8982 |
tgagaaggagagaacaaagaaatgaagacattgtataacaaataacacacaacaattatggatgtttcaagctttaaaa |
9060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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