View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14231_low_1 (Length: 1047)
Name: NF14231_low_1
Description: NF14231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14231_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 519; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 18 - 563
Target Start/End: Complemental strand, 31896792 - 31896242
Alignment:
| Q |
18 |
aattatacgactataacacgagtattataccttgtacttaagttctttgaatatcactgctaaattgcaaactattaaaaccaaattttgtatttcaggg |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31896792 |
aattatatgactataacacgagtattataccttgtacttaagttctttgaatatcactgctaaattgcaaactattaaaaccaaattttgtatttcaggg |
31896693 |
T |
|
| Q |
118 |
ttgccaaagtggagtgagatctgtgtatgcaactgctgatcttctagctgaagtatgttaattcctgtcaacttcactacattcttcatgaaaattaaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31896692 |
ttgccaaagtggagtgagatctgtgtatgcaactgctgatcttctagctgaagtatgttaattcctgtcaacttcactacattcttcatgaaaattaaat |
31896593 |
T |
|
| Q |
218 |
catttgaatatgaaatcttaactcctcaatttctattcattctgcattctcaatttgttgtgtggcaggggtttaaggatgtgtacaacatgggaggagg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31896592 |
catttgaatatgaaatcttaactcctcaatttctatacattctgcattctcaatttgttgtgtggcaggggtttaaggatgtgtacaacatgggaggagg |
31896493 |
T |
|
| Q |
318 |
ttatctagagtgggttaaaaaggagtttccagtgaagatacatgtgaccgaataggagcttttgctcagttatgttatatgatcttgtatgtataattag |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31896492 |
ttatctagagtgggttaaaaaggagtttccagtgaagatacatgtgaccgaataggagcttttgctcagttatgttatatgatcttgtatgtataattag |
31896393 |
T |
|
| Q |
418 |
aatggaccctttcacaattaccactttcaacgtgttcattaagttc-----tttttagatgcttgagtgtagtagtgtgtaaccaagacaaactatgttt |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31896392 |
aatggaccctttcacaattaccactttcaacatgttcattaagttctataatttttagatgcttgagtgtagtagtgtgtaaccaagacaaactatgttt |
31896293 |
T |
|
| Q |
513 |
acagttgtatctacttgacttgaataaatgcaaaagattgcaatctgggta |
563 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31896292 |
acagttgtatctacttgacttgaataaatgcaaaagattgcaatctgggta |
31896242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 562 - 794
Target Start/End: Complemental strand, 31896204 - 31895972
Alignment:
| Q |
562 |
tacttgacctagctactactattgccttaaaaaacttttcaagatgtacttttaattctactcaccaatatgtctagttccacttttgaaagtgtcgaaa |
661 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| |
|
|
| T |
31896204 |
tacttgacctagctactactattgccttaaaaaacttttcaagatgtacttttaattctactcaccaatatgtctagttacacttttggaagagtcgaaa |
31896105 |
T |
|
| Q |
662 |
ttcattttagagatataaatttaattttgacatgtctaaatgtttttcaataagacaatattttttcattaccaatcatgctttaacgaaacgcaagaat |
761 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31896104 |
ttcattttagagatataaatttaattttaacatgtctaaatgtttttcaataagataatgttttttcattaccaatcgtgctttaacgaaacgcaagaat |
31896005 |
T |
|
| Q |
762 |
aatctttcaccattagatttatctccgaccaca |
794 |
Q |
| |
|
||||||||| |||||||||||||||| |||||| |
|
|
| T |
31896004 |
aatctttcatcattagatttatctccaaccaca |
31895972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 959 - 1043
Target Start/End: Complemental strand, 31895868 - 31895784
Alignment:
| Q |
959 |
catgacttctaactaaaatttatcattcatctcatttttatggttattgatgcaaacatataaatcattccacattcatatcact |
1043 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
31895868 |
catgacttctaactaaaatttatcattcatctcatttttatggttattgatgcaaacatataaatcatttcacattcatctcact |
31895784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 730 - 794
Target Start/End: Original strand, 7252316 - 7252380
Alignment:
| Q |
730 |
ttaccaatcatgctttaacgaaacgcaagaataatctttcaccattagatttatctccgaccaca |
794 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
7252316 |
ttacgaatcatggtttaacgaaacgcaagaataattcttcattattagatttatctccgaccaca |
7252380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University