View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14231_low_16 (Length: 494)
Name: NF14231_low_16
Description: NF14231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14231_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 17 - 480
Target Start/End: Original strand, 3530597 - 3531060
Alignment:
| Q |
17 |
atgataaacttatggaagaaatgagatcattaggagaacaatatcaaatggaatggaatgatactatgaatttggttacatcaactttgtggttaaattt |
116 |
Q |
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| T |
3530597 |
atgataaacttatggaagaaatgagatcattaggagaacaatatcaaatggaatggaatgatactatgaatttggttacatcaactttgtggttaaattt |
3530696 |
T |
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| Q |
117 |
cttgaagaaaatggaacatgatgcatatacaacacaagaggatgatgcatgtcatgtctttgaatcatggaatttccaacttggttgaatagacaagaag |
216 |
Q |
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| T |
3530697 |
cttgaagaaaatggaacatgatgcatatacaacacaagaggatgatgcatgtcatgtctttgaatcatggaatttccaacttggttgaatagacaagaag |
3530796 |
T |
|
| Q |
217 |
aaatctgtttagaacagtggtcacatgatcacttcatatatctcaacttaccttggtaagttcaacaaaaatttcataacttttgaaaatgaaattttgt |
316 |
Q |
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| T |
3530797 |
aaatctgtttagaacagtggtcacatgatcacttcatatatctcaacttaccttggtaagttcaacaaaaatttcataacttttgaaaatgaaattttat |
3530896 |
T |
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| Q |
317 |
ttaaaaaagttctttttggctgtacttttgtacctatcaaaataaaaggtacatggcaatatgtgcacctttgtttaaattttcttgtaacatagccata |
416 |
Q |
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| T |
3530897 |
ttaaaaaagttctttttggttgtacttttgtacctatcaaaataaaaggtacatgacaatatgtgcacctttgtttaaattttcttgtaacatagccata |
3530996 |
T |
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| Q |
417 |
aaactttaagtaaattttatcttttaattacacacttattttttgcgaattagatttaagttat |
480 |
Q |
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| T |
3530997 |
aaactttaagtaaattttatcttttaattacacacttattttttgcgaattagatttaagttat |
3531060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 48681485 - 48681441
Alignment:
| Q |
55 |
caatatcaaatggaatggaatgatactatgaatttggttacatca |
99 |
Q |
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| T |
48681485 |
caatatcaaatggaatggaatgacactatgaatttggttaaatca |
48681441 |
T |
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