View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14231_low_19 (Length: 478)
Name: NF14231_low_19
Description: NF14231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14231_low_19 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Original strand, 7170836 - 7171287
Alignment:
| Q |
18 |
atattttgcatcacttaatctatccaacaacaaatatggaagatatttttgacttatttcatgaataacatttttatatcagtcttcttctatgaaactt |
117 |
Q |
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| T |
7170836 |
atattttgcatcacttaacctatccaacaacaaacatggaagatatttttgacttatttcatgaataacatttttatatcagtcttcttctatgaaactt |
7170935 |
T |
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| Q |
118 |
tttgaaaaaagattactctatagttttttacaattgattgaaaagagaacaacatgattattttataaactcaatggtttgtcaacaatgnnnnnnnnnn |
217 |
Q |
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| T |
7170936 |
tttgaaaaaagattactctatagttttttacaattgattgaaaagagaaccacatgattattttataaactcaatggtttgtcaacaatgatatatatat |
7171035 |
T |
|
| Q |
218 |
nn--ttacagctatcatatctctatctttttctccaattgggtatacacaaaatagttttgtattagatttcgctatcgaagtctccaaatcgcaagcaa |
315 |
Q |
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| T |
7171036 |
atatttacaactatcatatctctatctttttctccaattgggtgtacacaaaatagttttctattagatttcgctatcgaagtctccaaatcgcaagcaa |
7171135 |
T |
|
| Q |
316 |
atcttcgttcnnnnnnngtcattggttgatatcgaatcattattatatcctctatgatcgagacaaataatatgttgcagaagatgaataggctaaagat |
415 |
Q |
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| T |
7171136 |
atcttcgttctttttttgtcattggtttatatcgaatcattgttatatccactatgatcgagacaaataatatgttgcagaagatgaataggctaaaaat |
7171235 |
T |
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| Q |
416 |
gaattcaattattaccagcttcaagattgttctcgtttccctcagttttctt |
467 |
Q |
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| T |
7171236 |
gaattcaattattaccagcttcaagattgttctcgtttccctcagttttctt |
7171287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 14805124 - 14805009
Alignment:
| Q |
30 |
acttaatctatccaacaacaaatatggaagatatttttgacttatttcatgaataacatttttatatcagtcttcttctatgaaactttttgaaaaaaga |
129 |
Q |
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| T |
14805124 |
acttaacccatccaacaacaaatatggaagacatttttaacttatttcttgaataacattctta-atgagtctttttctatgaaattttttccaaaaaga |
14805026 |
T |
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| Q |
130 |
ttactctatagtttttt |
146 |
Q |
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| T |
14805025 |
ttactcaatagtttttt |
14805009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 7174155 - 7174270
Alignment:
| Q |
30 |
acttaatctatccaacaacaaatatggaagatatttttgacttatttcatgaataacatttttatatcagtcttcttctatgaaactttttgaaaaaaga |
129 |
Q |
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| T |
7174155 |
acttaacccatccaacaacaaatatggaagacatttttaacttatttcttaaataacattctta-atgagtcttcttctatgaaattttttacaaaaaga |
7174253 |
T |
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| Q |
130 |
ttactctatagtttttt |
146 |
Q |
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| T |
7174254 |
ttactgaatagtttttt |
7174270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 304
Target Start/End: Original strand, 7174346 - 7174430
Alignment:
| Q |
221 |
tacagctatcatatc-tctatctttttctccaattgggtatacacaaaatagttttgtattagatttcgctatcgaagtctccaa |
304 |
Q |
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| T |
7174346 |
tacaactatcatatcctctatctttttcctcaattggatgtacacgaaatagttttctataagatttccctatcgacgtctccaa |
7174430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 34603 - 34718
Alignment:
| Q |
30 |
acttaatctatccaacaacaaatatggaagatatttttgacttatttcatgaataacatttttatatcagtcttcttctatgaaactttttgaaaaaaga |
129 |
Q |
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| T |
34603 |
acttaacccatccaacaacaaatatggaagacatttttaacttatttcttgaataacattctta-atgagtctttttctatgaaattttttccaaaaaga |
34701 |
T |
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| Q |
130 |
ttactctatagtttttt |
146 |
Q |
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|||||| |||||||||| |
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| T |
34702 |
ttactcaatagtttttt |
34718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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