View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14231_low_20 (Length: 455)
Name: NF14231_low_20
Description: NF14231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14231_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 76 - 444
Target Start/End: Original strand, 7966545 - 7966913
Alignment:
| Q |
76 |
actcacgataccatttaaactgatattaaaatgattgatcatcccttacattgtagaaaaacaagaagctaccatttgtgctaattgtagcatgagtaaa |
175 |
Q |
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| T |
7966545 |
actcacgataccatttaaactgaaattaaaatgattgatcatcccttacattgtagaaaaacaagaagctaccatttgtgctaattgtagcatgagtaaa |
7966644 |
T |
|
| Q |
176 |
gccaaaatcaatggttgttttgtaggcgggttatcttcaacagtcccaatcacatgacccaaaagcttcttcctattctcagcatacacgcctccattca |
275 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7966645 |
accaacatcaatggttgttttgtaagcgggttatcttcaacagtcccaatcacatgacccaaaagcttcttcctattctcagcatacacgtctccattca |
7966744 |
T |
|
| Q |
276 |
atccacgcttcaccaaatcacagctcagttcaaccgcagccttaaccgtttcctcaacgctatcatgcgccgagtcaacgatccccaatctcaccgcctc |
375 |
Q |
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| T |
7966745 |
atccacgcttcaccaaatcaccgctcaattcaaccgcagccttaaccgtttcctcaacgctatcatgcgccgagtcaacgatccccaatctcaccgcctc |
7966844 |
T |
|
| Q |
376 |
ctcagccgtcaccttctccgcctccgtcacaatcctcttcattgccaacgcatcaccaacctttgcttc |
444 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7966845 |
ctcagccgtcaccttctccgcctccgtcacaatcctcttcattgccaacgcatcaccaacctttgcttc |
7966913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 226 - 438
Target Start/End: Complemental strand, 7974182 - 7973970
Alignment:
| Q |
226 |
cacatgacccaaaagcttcttcctattctcagcatacacgcctccattcaatccacgcttcaccaaatcacagctcagttcaaccgcagccttaaccgtt |
325 |
Q |
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| T |
7974182 |
cacatgacccaaaaacttcttcctattctcagcatacacgtgtccatcccatccacgtttcaccaaattaccacccaattcaaccgcagccttaaccgtt |
7974083 |
T |
|
| Q |
326 |
tcctcaacgctatcatgcgccgagtcaacgatccccaatctcaccgcctcctcagccgtcaccttctccgcctccgtcacaatcctcttcattgccaacg |
425 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||| | |||||||| || || | ||| | |
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| T |
7974082 |
tcctccacgctatcatgcgccgagtcaacaatccccaatctcaccgcctccttcgccgtcaccttcgccgcctgcatcacaatcttcctcctcgccgcag |
7973983 |
T |
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| Q |
426 |
catcaccaacctt |
438 |
Q |
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||||||||||||| |
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| T |
7973982 |
catcaccaacctt |
7973970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 7966288 - 7966343
Alignment:
| Q |
1 |
agtgggtaagaatttcaatgtgtgggaaaagttttttctttattatgaaaactgcatg |
58 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7966288 |
agtgggtaagaatttcaatgtg--ggaaaagttttttctttattatgaaaactgcatg |
7966343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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