View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14231_low_22 (Length: 428)
Name: NF14231_low_22
Description: NF14231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14231_low_22 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 27794564 - 27794155
Alignment:
| Q |
1 |
gcatagtgaaagatattttcttgagaaacattatttaatccaacattataaggttatctgtctcatattccttgatttataagtttaatttgtaaatatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27794564 |
gcatagtgaaagatattttcttgagaaacattatttaatccaacattataaggttatctgtctcatattccttgatttataagtttaatttgtaaatatt |
27794465 |
T |
|
| Q |
101 |
aattataacataagctcattttgtcatgaattttattagggaaaagttgtaggttgagatggttcaatcaattggacccaagaataaacagaaatccttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27794464 |
aattataacataagctcattttgtcatgaattttattagggaaaagttgtaggttgagatggttcaatcaattggacccaagaataaacagaaatccttt |
27794365 |
T |
|
| Q |
201 |
cacggaggaagaagaagagcgtcttataacttctcatcggattcatggtaatagatgggcggtaattgcaagacacttccccggacggactgataacgct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27794364 |
cacggaggaagaagaagagcgtcttataacttctcatcggattcatggtaatagatgggcggtaattgcaagacacttccccggacggactgataacgct |
27794265 |
T |
|
| Q |
301 |
gtaaagaatcattggcatgtgatgatggcgaggattcgtcgagaaaggtataagatctatgcaaaaggtcctcttgatcatcacacaattttctcttcaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27794264 |
gtaaagaatcattggcatgtgatgatggcgaggattcgtcgagaaaggtataagatctatgcaaaaggtcctcttgatcatcacacaattttctcttcaa |
27794165 |
T |
|
| Q |
401 |
atgatcatca |
410 |
Q |
| |
|
|||||||||| |
|
|
| T |
27794164 |
atgatcatca |
27794155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 138 - 329
Target Start/End: Complemental strand, 40752185 - 40751994
Alignment:
| Q |
138 |
agggaaaagttgtaggttgagatggttcaatcaattggacccaagaataaacagaaatcctttcacggaggaagaagaagagcgtcttataacttctcat |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | || |||||||| ||||||| |||||||| || || ||||||||| | || | | ||||| |
|
|
| T |
40752185 |
agggaaaagttgtaggttgagatggttcaatcagctagatccaagaattaacagaagacctttcacagaagaggaagaagagagactacttgcggctcat |
40752086 |
T |
|
| Q |
238 |
cggattcatggtaatagatgggcggtaattgcaagacacttccccggacggactgataacgctgtaaagaatcattggcatgtgatgatggc |
329 |
Q |
| |
|
|||||||| || || | |||||| |||| ||||||| ||||| || | |||||||| ||||| ||||||||||||||||| || ||||| |
|
|
| T |
40752085 |
cggattcacggaaacaaatgggcactaatagcaagacttttccctggtagaactgataatgctgtgaagaatcattggcatgttataatggc |
40751994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 18245492 - 18245444
Alignment:
| Q |
145 |
agttgtaggttgagatggttcaatcaattggacccaagaataaacagaa |
193 |
Q |
| |
|
||||||||| ||||||||||||| ||| |||| |||||||| ||||||| |
|
|
| T |
18245492 |
agttgtaggctgagatggttcaaccaactggatccaagaatcaacagaa |
18245444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University