View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14231_low_24 (Length: 384)
Name: NF14231_low_24
Description: NF14231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14231_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 28664836 - 28665050
Alignment:
| Q |
4 |
gagattgttatttcaaaatttatgaagtcatttgatgaacacttacaatttatatgactaaaatatctatttacttaatattaagttttgattaacctgc |
103 |
Q |
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| T |
28664836 |
gagattgttatttcaaaatttatcaagtcatttgatgaacacttacaatttatatgactaaaatatctatttacttaatattaagttttgattaacctgc |
28664935 |
T |
|
| Q |
104 |
tatactaagttaacctcaagggtctaccattgaacttttttctaatatatgtacacatattagaagcacccctttatgtatttccaagtgaagtatataa |
203 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28664936 |
tatactaagttaacctcaagggtccaccattgaacttttttctaatatatgtacacatattagaagcacccctttatgtatttccaagtgaagtatataa |
28665035 |
T |
|
| Q |
204 |
atgcttcttatagtc |
218 |
Q |
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||||||||||||||| |
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| T |
28665036 |
atgcttcttatagtc |
28665050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 283 - 384
Target Start/End: Original strand, 28665115 - 28665216
Alignment:
| Q |
283 |
gaacaaaagtaggaaagtcattagccagaagagaagagatcctgtaataagttgtatctagatcagccaattagtaatacaagcagacagcacacacttt |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28665115 |
gaacaaaagtaggaaagtcattagccagaagagaagagatcctgtaataagttgtatctagatcagccaattagtaatacaagcagacagcacacacttt |
28665214 |
T |
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| Q |
383 |
tt |
384 |
Q |
| |
|
|| |
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|
| T |
28665215 |
tt |
28665216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 28664745 - 28664827
Alignment:
| Q |
1 |
atagagattgttatttcaaaatttatgaagtcatttgatgaacacttacaatttatatgactaaaatatctatttacttaata |
83 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28664745 |
atagagattgttatttcaaaatttatgaagtcatttgatgaacacttacaatttatatgactaaaatatctattttcttaata |
28664827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 16121138 - 16121102
Alignment:
| Q |
45 |
cttacaatttatatgactaaaatatctatttacttaa |
81 |
Q |
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|||||||||| ||||||||||||||||||||||||| |
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| T |
16121138 |
cttacaatttgaatgactaaaatatctatttacttaa |
16121102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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