View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14231_low_28 (Length: 331)
Name: NF14231_low_28
Description: NF14231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14231_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 4 - 315
Target Start/End: Complemental strand, 8465046 - 8464740
Alignment:
| Q |
4 |
tatttaatatttgtcggtgtctcgaacaaaaccccatctaaatatttaaacctagtgaactattcaaaatctctctccctctacttcactcctgtctgtc |
103 |
Q |
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| T |
8465046 |
tatttaatatttgtcggtgtctcgaacaaaaccc-atctaaatatttaaacctagtgaactattcagaatctctctccctctacttcactcctgtct--- |
8464951 |
T |
|
| Q |
104 |
ttgaaacacaatattgtatgcaatgtctctagcaaattcattcactatgctccatattnnnnnnnncatccatcttcttaattataagcaaaaatgtcaa |
203 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8464950 |
-tgaaacacaatattgtatgcaatgtatctagcaaattcattcactatgctccatattaaaaaaat-atccatcttcttaattataagcaaaaatgtcaa |
8464853 |
T |
|
| Q |
204 |
agaaagtttatatatttgatccatcaactttctttaactca-ttctttaacttataattaggaatggagagtgaaataactaagagccagaatcgaatta |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8464852 |
agaaagtttatatatttgatccatcaactttctttaactcattttttttacttataattaggaatggagagtgaaataactaagagccagaatcgaatta |
8464753 |
T |
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| Q |
303 |
tacatgagaaacc |
315 |
Q |
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||||||||||||| |
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| T |
8464752 |
tacatgagaaacc |
8464740 |
T |
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