View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14231_low_3 (Length: 660)
Name: NF14231_low_3
Description: NF14231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14231_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 17 - 644
Target Start/End: Original strand, 28938267 - 28938903
Alignment:
| Q |
17 |
ttctgtaaaggaataacatcataacatatatgttagaaagagtatagaagaatacttaaagacacagaaaatcatgatttccaattgtggacgcgatata |
116 |
Q |
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| T |
28938267 |
ttctgtaaaggaagaacattataacatatatattagaaagagtatagaagaatacttaaagacacagaaaatcatgatttccaattgtggccgcgatata |
28938366 |
T |
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| Q |
117 |
aagtattttaaggctttggc---------ggcattttcccataatataaaatttgatgtttaactacgaccgcaatttaaaacaatgttcaaaatagtaa |
207 |
Q |
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| T |
28938367 |
aagtattttaaggctttggctgcatcaacggcattttcccataatataaaatttgatgtttaactacgaccgcaatttaaaacaatgttcaaaatagtaa |
28938466 |
T |
|
| Q |
208 |
cactttgtttaggttggatagtgaacataccatcaactcatttatcttctcagaagactttgctgccagaattaagccatgaaaataaagtatcatatgt |
307 |
Q |
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| T |
28938467 |
cactttgtttaggttggatagtgaacataccatcaactcatttatcttctcagaagactttgctgccagaattaagccatgaaaataaagtatcatatgt |
28938566 |
T |
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| Q |
308 |
tagcaagattgtgactgaataacagtagaaaacaaagaatcgataacaaaagatgttttacatcgtaaatcttaattaccttgaaagttcttgctgaaat |
407 |
Q |
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| T |
28938567 |
tagcaagattgtgactgaataacagtagaaaacaaagaatcgataacaaaagatgttttacatcgtaaatcttaattaccttgaaagttcttgctgaaat |
28938666 |
T |
|
| Q |
408 |
ttccagattccttgaaaagttgttcaaaatggggcttgcaatagaggacaccatccattgaggagtaagtactcatctgaccaacatatatgatgaaacc |
507 |
Q |
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| T |
28938667 |
ttccagattccttgaaaagttgttcaaaatggggcttgcaatagaggacaccatccattgaggagtaagtactcatctgaccaacatatatgatgaaacc |
28938766 |
T |
|
| Q |
508 |
caacttagacacaagtttaaactatacnnnnnnncttctatgtgcaaatccaaccttaagaatgcggcagagttnnnnnnnnnnctcttgagaaagaact |
607 |
Q |
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| T |
28938767 |
caacttagacacaagtttaaactatactttttttcttctatgtgcaaatccaaccttaagaatgcggcagagttaaaaaaaaaactcttgagaaagaact |
28938866 |
T |
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| Q |
608 |
ttcttgtccatactatggtcctacccgacttgtgtat |
644 |
Q |
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| T |
28938867 |
ttgttgtccatactatggtcctacccgacttgtgtat |
28938903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 391 - 486
Target Start/End: Complemental strand, 11821537 - 11821442
Alignment:
| Q |
391 |
aaagttcttgctgaaatttccagattccttgaaaagttgttcaaaatggggcttgcaatagaggacaccatccattgaggagtaagtactcatctg |
486 |
Q |
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|||||||||||| ||||| ||||||||||||||||| ||||||||||| | ||||||||||| | |||||||| |||||||| ||||||||||| |
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| T |
11821537 |
aaagttcttgctaaaattgccagattccttgaaaagctgttcaaaatgtgttttgcaatagagaattccatccatggaggagtatgtactcatctg |
11821442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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